View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_13 (Length: 538)
Name: NF18317_high_13
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 43057342 - 43057789
Alignment:
| Q |
11 |
atcatcatctctaatctctagctttatgactgggaaacatcatcagttaatgtgtaccacgaagttaactcgtgtgcggttaagggccattcgtgctcct |
110 |
Q |
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| T |
43057342 |
atcatcatttctaatctctagctttatgactgggaaacatcatcagttaatgtgtaccacgaagttaactcgtgtgcggttaagggccattcgtgctcct |
43057441 |
T |
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| Q |
111 |
ttgagtttgaagcagttgtcattcgtgtaggttgtcctttactttcttttttctgtacaagtcctttacttgctttaaatatgaggtgatgttaggactg |
210 |
Q |
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| T |
43057442 |
ttgagtttgaagcagttgtcattcgtgtaggttgtcctttactttcttttttctgtacaagtcctttacttgctttaaatctgaggtgatgttaggactg |
43057541 |
T |
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| Q |
211 |
tttctttatttcgtttgattagttaacatcatttctttcttcnnnnnnnnnnta--aagttaacattatttccctttctcaatcacataaacaaaatgac |
308 |
Q |
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| T |
43057542 |
tttctttatttcgtttgattagttaacatcatttctttcttcaaaaaaaaaaaaagaagttaacattatttccctttctcaatcacataaacaaaatgac |
43057641 |
T |
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| Q |
309 |
atggtggacctataaatagcggtgtcaaattgggaaaattgagaggaaaatgtataagggtaagattaaatacacatgtagctcattacttgtattacca |
408 |
Q |
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| T |
43057642 |
atggtggacctataaatagcggtgtcaaattgggaaaattgagaggaaaatgtataagggtaagattaaatacacatgtagctcattgcttgtattacca |
43057741 |
T |
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| Q |
409 |
agatctacaaacataacactagttcattctgttatgtttttcaatatt |
456 |
Q |
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| T |
43057742 |
agatctacaaacataacactagttcattctgttatgtttttcaatatt |
43057789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 43057785 - 43057841
Alignment:
| Q |
482 |
atattttcaaaattttaatcgtttttatcgaacaaaatacaatcatatgttgtttat |
538 |
Q |
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| T |
43057785 |
atattttcaaaattttaatcgtttttatcgaacaaaatacaatcatatgttgtttat |
43057841 |
T |
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