View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_16 (Length: 507)
Name: NF18317_high_16
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 263 - 491
Target Start/End: Original strand, 7157645 - 7157873
Alignment:
| Q |
263 |
acctgtgataagggaaagagcagtgattagactcggtggcattgaaggcataataaatggaccaacaacaagaggtggaataatggaaacaaagtctatg |
362 |
Q |
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| T |
7157645 |
acctgtgataagggaaagagcagtgattagactcggtggcattgaaggcataataaatggaccaacaacaagaggtggaataatggaaacaaagtctatg |
7157744 |
T |
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| Q |
363 |
ttgtgttctttggaaaacttccatgcttcttgttctgccagggtttttgaaacaaaatacatctacaaaaatgggtaaagaagcataatatattagtgag |
462 |
Q |
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| T |
7157745 |
ttgtgttctttggaaaacttccatgcttcttgttctgccagggtttttgaaacaaaatacatctacaaaaatgggtaaagaagcataatatattagtgag |
7157844 |
T |
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| Q |
463 |
caaaaattttgagtcaatattgaacatgt |
491 |
Q |
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| T |
7157845 |
caaaaaatttgagtcaatattgaacatgt |
7157873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 7157403 - 7157597
Alignment:
| Q |
79 |
aagaatataaaaggagattttaaagtgaactattatcttgcatttttnnnnnnncaataaattattcgttcataaagcaggtgcaatcttttaagaaaaa |
178 |
Q |
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| T |
7157403 |
aagaatataaaaggagattttaaagtgaactattatcttgcatttttaaaaaaacaataaattattcgttcataaagcaggtgcaatcttttaagaaaaa |
7157502 |
T |
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| Q |
179 |
atagaagtgataataataaattcataa---------aaattatgtcattgtcacattaaatttttagagaggaattcacagtcacattaatatac |
264 |
Q |
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| T |
7157503 |
atagaagtgatgataataaattcataaaaaattaataaattatgtcattgtcacattaaatatttagagaggaattcacagtcacattaatatac |
7157597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 427
Target Start/End: Original strand, 7164818 - 7164988
Alignment:
| Q |
257 |
taatatacctgtgataagggaaagagcagtgattagactcggtggcattgaaggcataataaatggaccaacaacaagaggtggaataatggaaacaaag |
356 |
Q |
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| T |
7164818 |
taatataccagtgataggagaaagggcagtgattaggctaggtggcatggtaggaataagaaaaggaccaacaacaagaggtgggatgattgtgatgaaa |
7164917 |
T |
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| Q |
357 |
tctatgttgtgttctttggaaaacttccatgcttcttgttctgccagggtttttgaaacaaaatacatcta |
427 |
Q |
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| T |
7164918 |
tccatgttgtgctctttggcaaatttccatgcttcttgctccgcaagtgtctttgaaacaaaatacatcta |
7164988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 7157342 - 7157380
Alignment:
| Q |
5 |
gacccaaaaataacaactacaattaataatacaaggaga |
43 |
Q |
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| T |
7157342 |
gacccaaaaataacaactacaattaataatacaaggaga |
7157380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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