View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_20 (Length: 477)
Name: NF18317_high_20
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 46695737 - 46696184
Alignment:
| Q |
12 |
tcatcatcgccctttctctgaattggattactatccattaaagcaacatttgcaagattgttccgacttttattagtannnnnnngacctacttctcgaa |
111 |
Q |
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| T |
46695737 |
tcatcatcaccctttctctgaattggattaatatccattaaagcaacatttgcaagattgttccgacttttattagtatttttttgacctacttctcgaa |
46695836 |
T |
|
| Q |
112 |
taactgttccaccctcaactgaatctttcttgccaagtaatccaagaggatgatgtcgctcacttgaatgacgacgtgcatgagaagaattcttaagagc |
211 |
Q |
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| T |
46695837 |
taactgttccaccctcaactgaatctttcttgccaagtaatccaagaggatgatgtcgctcacttgaatgacgacttgcatgagaagaattcttaagagc |
46695936 |
T |
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| Q |
212 |
ttcctcatgtgaatatattttatttacattcccagatgaaactttatgcattgatttgtccaaaaggttattcctagcaatgaataatagagttatcaga |
311 |
Q |
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| T |
46695937 |
ttcttcatgtgaatatattttatttacattcccagatgaaactttatgcattgatttgtccaaaaggttattcctagcaatgaataatagagttatcaga |
46696036 |
T |
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| Q |
312 |
aacatcgatcaattatcgtaattcaaaatcataaacaacataaactaggaaaaagattttacaagtacctcgtgtagtcctttaaatagatcgggtcagg |
411 |
Q |
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| T |
46696037 |
aacatcgatcaattatcgtaattcaaaatcataaacaacataaactaggaaaaagattttacaagtacctcgtgtagtcctttaaatagatcgggtcagg |
46696136 |
T |
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| Q |
412 |
tgaattcaaaagagaataatccatgccaagcgagttcaacgtcgtagt |
459 |
Q |
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| T |
46696137 |
tgaattcaaaagagaataatccatgccaagcgagttcaacgtcgtagt |
46696184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 46704849 - 46704895
Alignment:
| Q |
26 |
tctctgaattggattactatccattaaagcaacatttgcaagattgt |
72 |
Q |
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| T |
46704849 |
tctcttaatttgatttctatccattaaagcaacattggcaagattgt |
46704895 |
T |
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