View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_high_21 (Length: 476)
Name: NF18317_high_21
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 17576747 - 17577189
Alignment:
| Q |
16 |
ataataatgagattcacacttcataannnnnnncacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17576747 |
ataataatgagattcacacttcataatttttttcacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgag |
17576846 |
T |
|
| Q |
116 |
ttttaatgaaagcttcttagggataggagagatttaatctgaaattttgtgatcctttacatgctacaactccctttttactaaaaaccataacaatatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17576847 |
ttttaatgaaagcttcttagggataggagagatttaatctgaaattttgtgaccctttacatgctacaactccctttttactaaaaaccataacaatacc |
17576946 |
T |
|
| Q |
216 |
tcgtggcataaaggttagtagtattcaggttacttgttagcattagataaaccagtttgctttcttgtgatataattttgactccatcttattgcttaan |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
17576947 |
tcgtggcataaaggttagtagtattcaggttacttgttagcattagataaaccagtttgctttcctgtgatataattctgactccatcttattgcttaa- |
17577045 |
T |
|
| Q |
316 |
nnnnnnncccacttttgtgattgaaattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctctgt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17577046 |
-ttttttcccacttttgtgattgaaattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctctgt |
17577144 |
T |
|
| Q |
416 |
cctcgaaagatcttctattgtttgcactctacatgttcataatag |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17577145 |
cctcgaaagatcttctattgtttgcactctacatgttcataatag |
17577189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University