View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_22 (Length: 471)
Name: NF18317_high_22
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 107 - 455
Target Start/End: Complemental strand, 29262360 - 29261997
Alignment:
| Q |
107 |
tattaaaccaataactcatacaaaattatagatatta---gataacaaaaatatcagcaacaataagttttttgttggggaccactttccacctactact |
203 |
Q |
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| T |
29262360 |
tattaaaccaataactcatacaaaattatagatattattagataacaaaaatatcagcaacaataagttttttgttggggaccactttcaacctactact |
29262261 |
T |
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| Q |
204 |
tactaccgcaaagctacaaagtacaaacacagcatatagggagatcagcaacatgttaagtc-----------------ctcacaatatgttaaagtcaa |
286 |
Q |
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| T |
29262260 |
tactaccgcaaagctactaagtacaaacacagcatatagggagatcagtaacatgttaagtcattccatatgttaagtcctcacaatatgttaaagtcag |
29262161 |
T |
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| Q |
287 |
ccaagttgtatttctttctagagtacaaataataataaaggactttattgattccatatccaccttatagtatataaaaggatgaagaggttattcaatg |
386 |
Q |
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| T |
29262160 |
ccaagttgtatttctttctagagtacaaataataataaaggactttattgattccatatccacct-----tatataaaaggatgaagaggttattcaatg |
29262066 |
T |
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| Q |
387 |
aggtgccaagaaagatgtacaaaaattacaccaaatgataggtacaaagtaaaaacccccagacaaaag |
455 |
Q |
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| T |
29262065 |
aggtgccaagaaagatgtacaaaaattacaccaaatgataggtacaaagtaaaaacacccagacaaaag |
29261997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 29258423 - 29258548
Alignment:
| Q |
48 |
aaagctactaccaagatgtttacaaagcataatgaaattacacaagga---aggttgacaattattaaaccaataactcatacaaaattatagatattag |
144 |
Q |
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| T |
29258423 |
aaagctactaccaagatgtctacaaagcatattgaaattatacaaggaggaaggttgacaataaataaaccaataactcatacaaaattatagagattag |
29258522 |
T |
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| Q |
145 |
ataacaaaaatatcagcaacaataag |
170 |
Q |
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| T |
29258523 |
ataacaaaaatatcagcaataataag |
29258548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 29286658 - 29286540
Alignment:
| Q |
54 |
actaccaagatgtttacaaagcataatgaaattacacaaggaag---gttgacaattattaaaccaataactcatacaaaattatagatattagataaca |
150 |
Q |
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||||||||||||| |||| |||||| |||||||||||||||||| |||| |||| | |||||||||||||||| ||||||||||||||| | |||||| |
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| T |
29286658 |
actaccaagatgtctacatagcatattgaaattacacaaggaagaaggttggcaataagtaaaccaataactcatgcaaaattatagatatca-ataaca |
29286560 |
T |
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| Q |
151 |
aaaatatcagcaacaataag |
170 |
Q |
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| T |
29286559 |
aaaatatccgcaacaataag |
29286540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 35235067 - 35234991
Alignment:
| Q |
94 |
gaaggttgacaattattaaaccaataactcatacaaaattatagatattagataacaaaaatatcagcaacaataag |
170 |
Q |
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|||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35235067 |
gaaggttggcaataagtaaaccaataactcatacaaaattatagatatcagataacaaaaatatcagcaacaataag |
35234991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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