View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_23 (Length: 461)

Name: NF18317_high_23
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_23
NF18317_high_23
[»] chr4 (18 HSPs)
chr4 (9-319)||(40590954-40591265)
chr4 (9-322)||(56080598-56080912)
chr4 (9-322)||(9033853-9034169)
chr4 (9-322)||(39502589-39502904)
chr4 (9-320)||(44506118-44506430)
chr4 (9-322)||(26695824-26696141)
chr4 (9-322)||(29051850-29052169)
chr4 (9-322)||(24072388-24072690)
chr4 (9-321)||(37995451-37995763)
chr4 (9-316)||(127849-128142)
chr4 (10-321)||(45620221-45620535)
chr4 (112-322)||(39499250-39499462)
chr4 (197-318)||(2623329-2623450)
chr4 (10-166)||(31334948-31335105)
chr4 (9-318)||(51790005-51790318)
chr4 (9-119)||(2623181-2623292)
chr4 (12-85)||(25960601-25960675)
chr4 (17-115)||(54230924-54231026)
[»] chr2 (7 HSPs)
chr2 (9-322)||(15805648-15805962)
chr2 (10-322)||(30518448-30518763)
chr2 (10-326)||(27641017-27641338)
chr2 (9-322)||(5614431-5614746)
chr2 (9-322)||(32597352-32597669)
chr2 (12-107)||(36871207-36871303)
chr2 (55-122)||(1683857-1683921)
[»] chr3 (21 HSPs)
chr3 (9-324)||(8082238-8082555)
chr3 (10-317)||(11685639-11685948)
chr3 (9-322)||(18996572-18996886)
chr3 (9-322)||(18999111-18999425)
chr3 (9-321)||(41957976-41958291)
chr3 (18-322)||(13696562-13696876)
chr3 (9-322)||(28246761-28247075)
chr3 (9-315)||(53151429-53151739)
chr3 (9-322)||(37608990-37609305)
chr3 (66-324)||(45572654-45572913)
chr3 (9-321)||(24373069-24373368)
chr3 (9-282)||(3777296-3777571)
chr3 (9-322)||(30800912-30801214)
chr3 (9-108)||(30260889-30260989)
chr3 (197-326)||(30260648-30260777)
chr3 (9-154)||(20307463-20307616)
chr3 (9-127)||(20329466-20329593)
chr3 (9-86)||(54162754-54162832)
chr3 (199-318)||(20307322-20307441)
chr3 (9-61)||(41295980-41296032)
chr3 (197-300)||(54162927-54163030)
[»] chr8 (19 HSPs)
chr8 (9-322)||(18916037-18916355)
chr8 (9-320)||(41486470-41486783)
chr8 (9-324)||(38526481-38526796)
chr8 (9-322)||(1197445-1197762)
chr8 (9-322)||(2734848-2735150)
chr8 (9-324)||(35563640-35563942)
chr8 (111-322)||(38567513-38567725)
chr8 (9-166)||(2001463-2001621)
chr8 (9-125)||(11661196-11661313)
chr8 (197-326)||(9686360-9686489)
chr8 (10-135)||(9686516-9686642)
chr8 (199-322)||(11661354-11661477)
chr8 (231-320)||(24697547-24697636)
chr8 (238-324)||(1996314-1996400)
chr8 (71-166)||(43596252-43596347)
chr8 (9-81)||(38567053-38567126)
chr8 (9-107)||(24697746-24697844)
chr8 (9-165)||(24697702-24697844)
chr8 (9-90)||(43595904-43595987)
[»] chr5 (13 HSPs)
chr5 (9-326)||(25897813-25898133)
chr5 (9-321)||(22213266-22213581)
chr5 (9-321)||(42393922-42394242)
chr5 (9-317)||(30493787-30494084)
chr5 (9-317)||(30534130-30534427)
chr5 (17-166)||(13946278-13946428)
chr5 (9-323)||(26945660-26945961)
chr5 (9-323)||(26674055-26674355)
chr5 (124-322)||(36275534-36275734)
chr5 (197-322)||(11740533-11740658)
chr5 (9-90)||(36275733-36275814)
chr5 (9-161)||(11741969-11742121)
chr5 (200-321)||(13946468-13946579)
[»] chr7 (21 HSPs)
chr7 (9-324)||(20372333-20372653)
chr7 (9-320)||(47266248-47266563)
chr7 (9-325)||(30586057-30586360)
chr7 (9-321)||(49141852-49142154)
chr7 (12-324)||(31293020-31293320)
chr7 (66-317)||(41743126-41743379)
chr7 (9-285)||(44079874-44080151)
chr7 (326-442)||(47638926-47639042)
chr7 (9-166)||(22916572-22916730)
chr7 (231-324)||(32031358-32031451)
chr7 (12-166)||(43174979-43175134)
chr7 (197-285)||(31577426-31577514)
chr7 (18-94)||(31577612-31577688)
chr7 (244-324)||(27620193-27620273)
chr7 (9-54)||(41743375-41743420)
chr7 (17-107)||(8047754-8047845)
chr7 (111-166)||(27620063-27620118)
chr7 (18-64)||(27619994-27620040)
chr7 (234-302)||(2659723-2659790)
chr7 (231-319)||(22916796-22916884)
chr7 (231-278)||(43174898-43174945)
[»] chr1 (21 HSPs)
chr1 (9-326)||(45360167-45360486)
chr1 (9-324)||(19565162-19565479)
chr1 (9-302)||(40125432-40125727)
chr1 (9-320)||(5555196-5555508)
chr1 (9-301)||(21620060-21620355)
chr1 (9-317)||(43068921-43069215)
chr1 (9-321)||(14236398-14236692)
chr1 (124-324)||(32550356-32550555)
chr1 (9-125)||(25473720-25473837)
chr1 (9-320)||(3656524-3656816)
chr1 (9-304)||(4643603-4643885)
chr1 (18-156)||(25304207-25304347)
chr1 (9-90)||(32550275-32550357)
chr1 (9-108)||(6693928-6694028)
chr1 (9-156)||(16296644-16296792)
chr1 (232-303)||(3027742-3027813)
chr1 (231-303)||(25304381-25304453)
chr1 (255-303)||(16296884-16296932)
chr1 (9-85)||(35371592-35371668)
chr1 (145-304)||(6694023-6694185)
chr1 (9-89)||(3027955-3028036)
[»] chr6 (4 HSPs)
chr6 (55-322)||(4653574-4653841)
chr6 (11-329)||(33756388-33756691)
chr6 (18-166)||(24765358-24765507)
chr6 (231-318)||(24765199-24765286)
[»] scaffold0051 (1 HSPs)
scaffold0051 (10-322)||(59015-59317)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 40590954 - 40591265
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  40590954 gattatactcatgtttgttatgaggttgagaaaaaaatattcctggatataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 40591053  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||          |||||||||||||       |||||||||||    
T  40591054 aatttattctcatgttaagaggtgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 40591153  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
    ||||||||||||||||       || ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| ||    
T  40591154 attatttgccaaacactttttttaataaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaa 40591253  T
Q  308 aaacaaacgccc 319  Q
    ||||||||||||    
T  40591254 aaacaaacgccc 40591265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 56080912 - 56080598
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  56080912 gattatactcatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaactttccataacttccattattcccatg 56080813  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||          |||||||||||||       |||||||||||    
T  56080812 aatttattctcatgttaagaggtgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 56080713  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     ||||||| |||||||       |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| ||    
T  56080712 gttatttgtcaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaa 56080613  T
Q  308 aaacaaacgccccct 322  Q
    ||| |||||||||||    
T  56080612 aaataaacgccccct 56080598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 9033853 - 9034169
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  9033853 gattatactcatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaactttccataacttccattattcccatg 9033952  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||       ||||||||||    
T  9033953 aatatattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 9034052  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattccc-gagtatgttattcctaggaataatttgtgtttcca 305  Q
    | ||||||| |||||||       ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||     
T  9034053 agttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccggggtatgttattcctgggaataatttgtgtttccc 9034152  T
Q  306 aaaaacaaacgccccct 322  Q
    |||||||||||||||||    
T  9034153 aaaaacaaacgccccct 9034169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 39502904 - 39502589
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    |||||||  |||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  39502904 gattatatccatgtttgttatgaggttgagaaaaaaaattcctaggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatga 39502805  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt--nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       ||||||||||    
T  39502804 atttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaattgtaacttccaattttttcaggaatgtca 39502705  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||| |    
T  39502704 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttccca 39502605  T
Q  307 aaaacaaacgccccct 322  Q
    |||| |||| ||||||    
T  39502604 aaaataaacaccccct 39502589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 44506430 - 44506118
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||     
T  44506430 gattatacccatgtttgttatgaggttgagaaaaaaatattcttgggtataaaggttcttgggaatggagtaacttcccataacttccattattcccata 44506331  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||| ||||||       |||||||| ||    
T  44506330 aatatattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaatttccaattttttcaggaatgttaa 44506231  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||   |||||||||||| | |||||||||||||| | ||    
T  44506230 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccagatatgttattcctggaaataatttgtgttttccaa 44506131  T
Q  308 aaacaaacgcccc 320  Q
    |||||||||||||    
T  44506130 aaacaaacgcccc 44506118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 26696141 - 26695824
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa--tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccat 106  Q
    |||||||| |||||||||||| ||||||||||||||  |||| |||||||||||||||  ||| ||| ||||||||||||||||||||||||||| ||||    
T  26696141 gattatacccatgtttgttatgaggttgagaaaaaaaatatttctgggtataaaggttcatggaaatagagtaacttcccataacttccattattcccat 26696042  T
Q  107 gaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga--tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgt 204  Q
     || |||||| |||||||||| |||||||||| ||||||||||||||||||||||||  |||          |||||||||||||       ||||||||    
T  26696041 aaacttattcccatgtaaagagatgggaatgtacattcccatgatattatgcatagattttttttaaaaaaattgtaacttccaatttttctaggaatgt 26695942  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  26695941 caagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcc 26695842  T
Q  305 aaaaaacaaacgccccct 322  Q
     ||||||||||| |||||    
T  26695841 caaaaacaaacgtcccct 26695824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 29051850 - 29052169
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| ||| |||||||| |||||||||||| |||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||| |||||    
T  29051850 gattatacccatatttgttatgaggttgagaaaaaaatattcctgggtataaaagttcatgggaatggagtaacttctcataacttccattattcccatg 29051949  T
Q  108 aa-tttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt----nnnnnnnnnnttgtaacttccaannnnnnnaggaat 202  Q
    || ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||              | |||||||||||       ||||||    
T  29051950 aattttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaattagtaacttccaatttttccaggaat 29052049  T
Q  203 gtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgttt 302  Q
    ||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| | |||||||||||  |||||||||||||||    
T  29052050 gtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggcatgttattcctgagaataatttgtgttt 29052149  T
Q  303 ccaaaaaacaaacgccccct 322  Q
    || |||||||||||||||||    
T  29052150 cccaaaaacaaacgccccct 29052169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 24072690 - 24072388
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  24072690 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 24072591  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn--ttgtaacttccaannnnnnnaggaatgtc 205  Q
                  |||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       |||||||||    
T  24072590 --------------taaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtc 24072505  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||     
T  24072504 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctggaaatagtttgtgtttccc 24072405  T
Q  306 aaaaacaaacgccccct 322  Q
    |||||||||||||||||    
T  24072404 aaaaacaaacgccccct 24072388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 37995763 - 37995451
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||    
T  37995763 gattatacccatgtttgttatgaggttgagaaaaaatattcatgggtataaaggttccttggaatggagtaacttcccataacttccattattcctatga 37995664  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaaa 208  Q
    |||||||| |||||||||| ||| |||||||||||||||||||||||| |||| |||            |||||||| |||       || ||| ||||     
T  37995663 atttattcccatgtaaagagatgagaatgtgcattcccatgatattatacatatattctaaaaaaaaaatgtaactttcaatttttccagaaatatcaag 37995564  T
Q  209 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaa 308  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||  ||  ||||||||  || |||||||||||||| |||    
T  37995563 ttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggataaattattcctgagattaatttgtgtttcccaaa 37995464  T
Q  309 aacaaacgccccc 321  Q
    |||||||| ||||    
T  37995463 aacaaacgtcccc 37995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 127849 - 128142
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||  |||||||| ||||||||||||||||||| |||||| |||||    
T  127849 gattatactcatgtttgttatgaggttgagaaaaaaatattcctgagtataaaggttcatgggaatgaagtaacttcccataacttctattattcccatg 127948  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
                  |||||| |||||||||| ||||||||| |||||||||||||||||          |||||||||  ||       |||||||||||    
T  127949 --------------taaagagatgggaatgtacattcccataatattatgcatagatttaaaaaaaaa-ttgtaacttttaatttttcaaggaatgtcaa 128033  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||| ||||||       ||||||||  ||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||| ||    
T  128034 gttatttgcaaaacacatcttttaacaaatattcaagaatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgtttcctaa 128133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 45620221 - 45620535
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| | || |||||| | || |||| |||||||||||||||||||||||||| ||||||    
T  45620221 attatacccatgtttgttataaggttgagaaaaaaatattcctgagcattaaggttcccggaaatgaagtaacttcccataacttccattattcccatga 45620320  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatt----tnnnnnnnnnnttgtaacttccaannnnnnnaggaatgt 204  Q
    |||||||| ||  |||||| ||| ||||||||||| |||||||||| | ||||||||               |||||||||||||       ||||||||    
T  45620321 atttattccca-ataaagagatgagaatgtgcatttccatgatattctccatagattaaaaaaaaaaaaaaattgtaacttccaattttcccaggaatgt 45620419  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| ||||||| |||||||       | |||||||||| ||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||| |||    
T  45620420 caagttatttg-caaacactttttttagcaaatacccaggaatcaaattttcgtattttcattcccgtgtatgttattcctggaaataatttgtgtatcc 45620518  T
Q  305 aaaaaacaaacgccccc 321  Q
      |||||||||||||||    
T  45620519 tcaaaacaaacgccccc 45620535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 39499462 - 39499250
Alignment:
Q  112 tattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn--ttgtaacttccaannnnnnnaggaatgtcaaat 209  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       ||||||||||| |    
T  39499462 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaattttttcaggaatgtcaagt 39499363  T
Q  210 tatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaa 309  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||| ||||    
T  39499362 tatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttcccaaaa 39499263  T
Q  310 acaaacgccccct 322  Q
    | |||| ||||||    
T  39499262 ataaacaccccct 39499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 2623329 - 2623450
Alignment:
Q  197 aggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataattt 296  Q
    ||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2623329 aggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataattt 2623428  T
Q  297 gtgtttccaaaaaacaaacgcc 318  Q
    |||||||| |||||||||||||    
T  2623429 gtgtttcccaaaaacaaacgcc 2623450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 31334948 - 31335105
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    |||||||  |||||| |||| || ||||||||| |||||||  ||||||||||||| || |||||| |||||||| |||| |||||||||||| ||||||    
T  31334948 attataccaatgtttattatgagattgagaaaaaaatattctagggtataaaggttcctaggaatgaagtaactttccatgacttccattattcccatga 31335047  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  31335048 atttattctcatataaagagatggaaatgtgcattcccatgatattatgcatagattt 31335105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 51790005 - 51790318
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||| | ||||||||||  || ||||| ||||||||| |||||||||||||||| |||||    
T  51790005 gattatactcatgtttgttatgaggtttagaaaaaaatattcctagatataaaggtttgtgagaatgaagtaacttctcataacttccattattcccatg 51790104  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca- 206  Q
    ||||||||||||||||||||  ||  |||||||||||||| |||||| ||| |||| ||           ||||||||||||       |  |||||||     
T  51790105 aatttattctcatgtaaagaggtgaaaatgtgcattcccacgatattctgcctaga-ttaaaaaaaaaaatgtaacttccaattttcctaaaaatgtcaa 51790203  T
Q  207 ---aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
       | ||| |||||||||||       || |||||| || |||||||||||||||||||||||||||  ||||||||||| | |||||||||||||||||    
T  51790204 gttagttagttgccaaacacttattttaataaatactcatgaatcaaattttcatattttcattcccatgtatgttattcatgggaataatttgtgtttc 51790303  T
Q  304 caaaaaacaaacgcc 318  Q
    |  ||||||||||||    
T  51790304 cccaaaacaaacgcc 51790318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 2623181 - 2623292
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| ||||||||| ||||||| ||||  ||||||| ||||||||||||||||||||||||||| ||||     
T  2623181 gattatacccatgtttgttatgaggttgagaaaaaaatattcctaggtataagggttcttgggaatagagtaacttcccataacttccattattcccata 2623280  T
Q  108 aatttattctca 119  Q
    ||||||||||||    
T  2623281 aatttattctca 2623292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 25960601 - 25960675
Alignment:
Q  12 tatactcatgtttgttataaggttgagaaaaaat-attcctgggtataaaggttactgggaatggagtaacttcc 85  Q
    ||||| ||||||||||| ||| |||||||||||| | |||||||||||| |||| ||||||||| | ||||||||    
T  25960601 tatacccatgtttgttacaagattgagaaaaaattaatcctgggtataacggttcctgggaatgaaataacttcc 25960675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 54231026 - 54230924
Alignment:
Q  17 tcatgtttgttataaggttgagaaaaaata----ttcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaattt 112  Q
    ||||||||||||| || ||||||||||| |    ||| | | ||||||||||  || ||||| |||||||||||||||||| |||||||| ||| |||||    
T  54231026 tcatgtttgttatgagattgagaaaaaaaaaaaattcatagatataaaggttcttgagaatgaagtaacttcccataactttcattattttcataaattt 54230927  T
Q  113 att 115  Q
    |||    
T  54230926 att 54230924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 15805648 - 15805962
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  15805648 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 15805747  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||       || ||||||||    
T  15805748 aatatattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccagaaatgtcaa 15805847  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     ||||||| |||||||       ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||    
T  15805848 gttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaa 15805947  T
Q  308 aaacaaacgccccct 322  Q
    |||||||||||||||    
T  15805948 aaacaaacgccccct 15805962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 30518763 - 30518448
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaa 109  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  30518763 attatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttcctgggaattgagtaacttcccataacttccattattcccatgaa 30518664  T
Q  110 tttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga---tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |   |||          |||||||||||||       ||||||||||    
T  30518663 tttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatatattttttaaaaaaaaaattgtaacttccaatttttccaggaatgtca 30518564  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| |    
T  30518563 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcatgggaataatttgtgtttccca 30518464  T
Q  307 aaaacaaacgccccct 322  Q
    ||||||||||||||||    
T  30518463 aaaacaaacgccccct 30518448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 27641338 - 27641017
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    ||||||| |||||||||||| |||||||||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  27641338 attatacccatgtttgttatgaggttgagaaaaaaatatttctgggtataaagattcctgggaatggagtaacttcccataacttccattatttccatga 27641239  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt----nnnnnnnnnnttgtaacttccaannnnnnnaggaatgt 204  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||              ||||||||| |||       |||||||     
T  27641238 atttattctcatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaataaaaattgtaactttcaatttttccaggaatgc 27641139  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  27641138 caagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaataatttttgtttcc 27641039  T
Q  305 aaaaaacaaacgcccccttagt 326  Q
     |||||||||||||||| ||||    
T  27641038 caaaaacaaacgcccccatagt 27641017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 5614431 - 5614746
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5614431 gattatacccatgtttgttatgaggttgagaaaaaaatattcttgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 5614530  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||           ||||||||| |||       | ||||||||    
T  5614531 aatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaactttcaatttttccaagaatgtca 5614630  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       |||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||| |    
T  5614631 agttatttgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgagtatattattcctgggaatagtttgtgtttccca 5614730  T
Q  307 aaaacaaacgccccct 322  Q
    ||||||||||||||||    
T  5614731 aaaacaaacgccccct 5614746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 32597669 - 32597352
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  32597669 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgagaatggagtaacttcccataacttccattattcccatg 32597570  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt---nnnnnnnnnnttgtaacttccaannnnnnnaggaatgt 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||             |||||||||||||       ||||||||    
T  32597569 aatttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaataaaaaaattgtaacttccaatttttccaggaatgt 32597470  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| |||||||| |||||        |||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||  |||||||||||||||||    
T  32597469 caagttatttgctaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatattatttctgagaataatttgtgtttcc 32597370  T
Q  305 aaaaaacaaacgccccct 322  Q
     |||||||||||||||||    
T  32597369 caaaaacaaacgccccct 32597352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 36871303 - 36871207
Alignment:
Q  12 tatactcatgtttgttataaggttgagaaaaaat-attcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||| ||||||| ||| ||| |||| ||| ||| |||||||||||| ||||||  ||||||| || ||||||||||||||||||| |||| |||||    
T  36871303 tatacccatgttttttacaagattgataaacaattattcctgggtatgaaggttcttgggaatagaataacttcccataacttccaatattcccatg 36871207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 1683921 - 1683857
Alignment:
Q  55 tataaaggttactgggaatggagtaacttcccataacttccattatttccatgaatttattctcatgt 122  Q
    ||||||||||  |||||||| ||||||||   |||||||| ||||||||||||| |||||||||||||    
T  1683921 tataaaggtttttgggaatgaagtaactt---ataacttctattatttccatgagtttattctcatgt 1683857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 8082238 - 8082555
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||  ||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  8082238 gattatatccatttttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 8082337  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||       ||||||||||    
T  8082338 aatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 8082437  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |    
T  8082438 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttccca 8082537  T
Q  307 aaaacaaacgccccctta 324  Q
    ||||||||||||||||||    
T  8082538 aaaacaaacgccccctta 8082555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 11685639 - 11685948
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  11685639 attatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttctcataacttccattattcccatga 11685738  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||          |||||||||||||       |||||||||||    
T  11685739 atttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaatttttacaggaatgtcaa 11685838  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||    
T  11685839 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctatgaataatttgtgtttcccaa 11685938  T
Q  308 aaacaaacgc 317  Q
    ||||||||||    
T  11685939 aaacaaacgc 11685948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 18996886 - 18996572
Alignment:
Q  9 gattatactcatgtttgttataaggttgag--aaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccat 106  Q
    |||||||| |||||| ||||| ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  18996886 gattatacccatgtt-gttatgaggttgaggaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccat 18996788  T
Q  107 gaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    |||||||||| |||||||||  |||| |||||||||||||||||||||||||||| ||||          |||||||||||||       ||||||||||    
T  18996787 gaatttattcccatgtaaagggatggaaatgtgcattcccatgatattatgcataaatttttaaaaaaaattgtaacttccaatttttccaggaatgtca 18996688  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||| ||||||||       |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |    
T  18996687 agttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctaggaataatttgtgtttccca 18996588  T
Q  307 aaaacaaacgccccct 322  Q
    ||||||||||||||||    
T  18996587 aaaacaaacgccccct 18996572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 18999425 - 18999111
Alignment:
Q  9 gattatactcatgtttgttataaggttgag--aaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccat 106  Q
    |||||||| |||||| ||||| ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  18999425 gattatacccatgtt-gttatgaggttgaggaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccat 18999327  T
Q  107 gaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    |||||||||| |||||||||  |||| |||||||||||||||||||||||||||| ||||          |||||||||||||       ||||||||||    
T  18999326 gaatttattcccatgtaaagggatggaaatgtgcattcccatgatattatgcataaatttttaaaaaaaattgtaacttccaatttttccaggaatgtca 18999227  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||| ||||||||       |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |    
T  18999226 agttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctaggaataatttgtgtttccca 18999127  T
Q  307 aaaacaaacgccccct 322  Q
    ||||||||||||||||    
T  18999126 aaaacaaacgccccct 18999111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 41958291 - 41957976
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||  |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  41958291 gattatatccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 41958192  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt--nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtc 205  Q
    ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||            | |||||||||||       |||||||||    
T  41958191 aatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaatcgtaacttccaattttttcaggaatgtc 41958092  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||     
T  41958091 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttccc 41957992  T
Q  306 aaaaacaaacgccccc 321  Q
    ||||||||||||||||    
T  41957991 aaaaacaaacgccccc 41957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 13696562 - 13696876
Alignment:
Q  18 catgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaatttattc 116  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  13696562 catgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatgaacttattc 13696661  T
Q  117 tcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt---------nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||                   |||||||||||||       |||||||||||    
T  13696662 ccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaaaaaaattgtaacttccaattttttcaggaatgtcaa 13696761  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       ||||||||| ||| |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| ||    
T  13696762 gttatttgccaaacactttttttaacaaatactcaataatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaa 13696861  T
Q  308 aaacaaacgccccct 322  Q
    |||||||||||||||    
T  13696862 aaacaaacgccccct 13696876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 28246761 - 28247075
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| | ||||||||||  |||||||||||||||||| |||||||||||||||  |||||    
T  28246761 gattatacccatgtttgttatgaggttgagaaaaaaatattcctagatataaaggttcatgggaatggagtaacttctcataacttccattatg-ccatg 28246859  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||| |||          |||||||||||||       | ||||||||    
T  28246860 aatttattcccatataaagatatgagaatgtgcattcccatgatattatgcatagatttttaaaaaaaaattgtaacttccaatttttccacgaatgtca 28246959  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | ||||||| |||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |    
T  28246960 agttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtatttccca 28247059  T
Q  307 aaaacaaacgccccct 322  Q
    ||||||||||||||||    
T  28247060 aaaacaaacgccccct 28247075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 53151429 - 53151739
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  53151429 gattatacccatgtttgttatcaggttgagaaaaaaatattcctaggtataaaggttcctgagaatggagtaacttcccataacttccattattcccatg 53151528  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-----nnnnnnnnnnttgtaacttccaannnnnnnaggaat 202  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||                ||||||||||||       ||||||    
T  53151529 aatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaaaatgtaacttccaatttttccaggaat 53151628  T
Q  203 gtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgttt 302  Q
    ||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||    
T  53151629 gtcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataa--tgtgttt 53151726  T
Q  303 ccaaaaaacaaac 315  Q
    || ||||||||||    
T  53151727 cccaaaaacaaac 53151739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 37608990 - 37609305
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||| || |||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| ||||     
T  37608990 gattagacccatgtttgttatgaggttgagaaaaaaatattcctgg-tataaaggtttctgggaatagagtaacttcccatgacttccattattcccata 37609088  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn--ttgtaacttccaannnnnnnaggaatgtc 205  Q
    || |||||| |||||||||| ||| |||||| ||||  |||||||||||||||||||||            |||||||||||||       |||||||||    
T  37609089 aacttattcccatgtaaagagatgagaatgtacattatcatgatattatgcatagatttttaaaaaaaaaattgtaacttccaatttttctaggaatgtc 37609188  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||     
T  37609189 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcactcccgggtatgttattcctgggaataatttgtgtttccc 37609288  T
Q  306 aaaaacaaacgccccct 322  Q
    |||||||||||||||||    
T  37609289 aaaaacaaacgccccct 37609305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 66 - 324
Target Start/End: Complemental strand, 45572913 - 45572654
Alignment:
Q  66 ctgggaatggagtaacttcccataacttccattatttccatgaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatt 165  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  45572913 ctgggaatggagtaacttcccataacttccattattctcatgaatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatt 45572814  T
Q  166 t-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttc 264  Q
    |           |||||||||||||       ||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  45572813 taaaaaaaaaaattgtaacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttc 45572714  T
Q  265 attcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccctta 324  Q
    ||||||| ||||||||||||   ||||||||| ||||||| |||||||||||||||||||    
T  45572713 attcccgggtatgttattcccgagaataatttatgtttcccaaaaacaaacgccccctta 45572654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 24373368 - 24373069
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||    
T  24373368 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacctcccataactttcattattcccatg 24373269  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn-ttgtaacttccaannnnnnnaggaatgtca 206  Q
                  |||||| ||| ||||||||||||||||||||||||||||||||||           |||||||||||||       ||||||||||    
T  24373268 --------------taaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 24373183  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  24373182 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccga-tatgttattcctgggaataatttgtgtttccca 24373084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 3777571 - 3777296
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||  || |||||||||||| ||||||||||||||||||| |||||    
T  3777571 gattatacccatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcttgagaatggagtaacctcccataacttccattattcccatg 3777472  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||          |||||||||||||       ||||||||||    
T  3777471 aatttattcccatgtaaagagatggaaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaatttttccaggaatgtca 3777372  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttatt 282  Q
    | |||| ||||||||||       |||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  3777371 agttatctgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcggatatgttatt 3777296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30800912 - 30801214
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctg-ggtataaaggttactgggaatggagtaacttcccataacttccattatttccat 106  Q
    |||||||| |||||||||||| |||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30800912 gattatacccatgtttgttatgaggttgagaaaaaaatattctttaggtataaaggttactgggaatggagtaacttctcataacttccattatttccat 30801011  T
Q  107 gaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnt-tgtaacttccaannnnnnnaggaatgtc 205  Q
    |              |||||| |||||||| |||||||||||||||||||||||||||||            ||||||||||||       |||||||||    
T  30801012 g--------------taaagagatgggaatatgcattcccatgatattatgcatagatttaaaaaaaaaaaatgtaacttccaatttttccaggaatgtc 30801097  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||     
T  30801098 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgtttccc 30801197  T
Q  306 aaaaacaaacgccccct 322  Q
    |||||||||||||||||    
T  30801198 aaaaacaaacgccccct 30801214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 30260989 - 30260889
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  30260989 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 30260890  T
Q  108 a 108  Q
    |    
T  30260889 a 30260889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 30260777 - 30260648
Alignment:
Q  197 aggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataattt 296  Q
    ||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||   ||||||||||    ||||||||    
T  30260777 aggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggaaatgttattccagaaaataattt 30260678  T
Q  297 gtgtttccaaaaaacaaacgcccccttagt 326  Q
    |||||||| |||||||||||||||||||||    
T  30260677 gtgtttcccaaaaacaaacgcccccttagt 30260648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 20307616 - 20307463
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttact---------gggaatggagtaacttcccataacttccatta 99  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||         ||||||| |||||| ||| ||||||| |||||    
T  20307616 gattatactcatgtttgttatgaggttaagaaaaaatattcctgggtataaaagtttctaggttttctgggaatgaagtaacgtcc-ataactttcatta 20307518  T
Q  100 tttccatgaatttattctcatgtaaagaaatgggaatgtgcattcccatgatatt 154  Q
    || | ||||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  20307517 ttcctatgaatttattctcatgtaaagagatgagaatgtgcattcccataatatt 20307463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 20329593 - 20329466
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttact---------gggaatggagtaacttcccataacttccatt 98  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||         ||||||| |||||||||||||||||| ||||    
T  20329593 gattatactcatgtttgttatgaggttgagaaaaaaatattcctgg-tataaaggttcctaggtttcttgggaatgaagtaacttcccataactttcatt 20329495  T
Q  99 atttccatgaatttattctcatgtaaaga 127  Q
    ||| | || ||||||||| ||||||||||    
T  20329494 attcctataaatttattcccatgtaaaga 20329466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 54162754 - 54162832
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttccc 86  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||| |||| ||||||| ||||||||| |||||||||||    
T  54162754 gattatacccatgtttgttataaggtcgagaaaaaaatattcctaggtacaaaggttcctgggaatgaagtaacttccc 54162832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 20307441 - 20307322
Alignment:
Q  199 gaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgt 298  Q
    |||||| || |||||||||||||||       ||||||||||||| ||||||||||| ||| |||||||| ||  ||||||||||||   ||||||||||    
T  20307441 gaatgttaagttatttgccaaacacttattttaacaaatacccaataatcaaatttttataatttcattctcggatatgttattcctgaaaataatttgt 20307342  T
Q  299 gtttccaaaaaacaaacgcc 318  Q
    |||||   ||||||||||||    
T  20307341 gtttctccaaaacaaacgcc 20307322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 41296032 - 41295980
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaag 61  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||| |||||||    
T  41296032 gattatactcatgtttgttataaggttgagaaaaattattattggatataaag 41295980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 54162927 - 54163030
Alignment:
Q  197 aggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataattt 296  Q
    ||||||||||| ||||| |||||||||       || ||||||| | |||||||||||||||||||| |||||||  || ||||||||| || |||| ||    
T  54162927 aggaatgtcaacttattcgccaaacacttttattaaaaaatacctaggaatcaaattttcatatttttattcccggataagttattcctgggtataactt 54163026  T
Q  297 gtgt 300  Q
    ||||    
T  54163027 gtgt 54163030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 18916037 - 18916355
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  18916037 gattatacccatgtttgttatgaggttgagaaaaaaatatttctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 18916136  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt----nnnnnnnnnnttgtaacttccaannnnnnnaggaatg 203  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||              |||||||||||||       |||||||    
T  18916137 aatttattcccatgtaaagagatgggaatgtgcattcccatgatattatacatagatttaaaaaaaataaaaattgtaacttccaatttttccaggaatg 18916236  T
Q  204 tcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  18916237 tcaaattatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgttattcctcggaataatttgtgtttc 18916336  T
Q  304 caaaaaacaaacgccccct 322  Q
    | |||||||||||||||||    
T  18916337 ccaaaaacaaacgccccct 18916355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 41486783 - 41486470
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  41486783 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacctcccataacttccattattcccatg 41486684  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||          |||||||||||||       ||||||||||    
T  41486683 aatttattctcatgtaaagatatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaatttatccaggaatgtca 41486584  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       |||||||| |||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||| |    
T  41486583 agttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatattttcagtcccggatatgttattcctgggaataatttgtgtttccca 41486484  T
Q  307 aaaacaaacgcccc 320  Q
    ||||||||||||||    
T  41486483 aaaacaaacgcccc 41486470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 38526796 - 38526481
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||| || |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  38526796 gattatacccatgtttgttatgaggttgagaaaaaaatatttctaggtataaaggttcctgggaatggagtaacttctcataacttccattattcccatg 38526697  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||          |||||||||||||       |||||||||||    
T  38526696 aatttattctcatgtaaagagatgagaatgtgcattcccatgatattatgcatagattt-taaaaaaaattgtaacttccaattttttcaggaatgtcaa 38526598  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||    
T  38526597 gttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttatgtttcccaa 38526498  T
Q  308 aaacaaacgccccctta 324  Q
    |||||||||||||||||    
T  38526497 aaacaaacgccccctta 38526481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 1197445 - 1197762
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||    
T  1197445 gattatatccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcttgggaatggagtaacttcccataacttctatt-tttccatg 1197543  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt----nnnnnnnnnnttgtaacttccaannnnnnnaggaatg 203  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||              |||||||||||||        ||||||    
T  1197544 aatttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaataaaataaaattgtaacttccaattttttctggaatg 1197643  T
Q  204 tcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
    |||| |||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||    
T  1197644 tcaagttatttgccaaacactttttttaacaaatacccaggaatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtgtttc 1197743  T
Q  304 caaaaaacaaacgccccct 322  Q
    | ||||||| |||||||||    
T  1197744 ccaaaaacacacgccccct 1197762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 2735150 - 2734848
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||          
T  2735150 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaattgagtaacttcccataacttccattatt------ 2735057  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn--ttgtaacttccaannnnnnnaggaatgtc 205  Q
            | |||||||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       |||||||||    
T  2735056 --------cgcatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaattgtaacttccaatttttccaggaatgtc 2734965  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||     
T  2734964 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaatagtttgtgtttccc 2734865  T
Q  306 aaaaacaaacgccccct 322  Q
    |||||||||||||||||    
T  2734864 aaaaacaaacgccccct 2734848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 35563640 - 35563942
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaata-ttcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| || ||||||||||| | ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  35563640 gattatacccatgtttgttatgagcttgagaaaaaaaaattcatgggtataaaggttcctgggaatggagtaatttcccataacttccattattcccatg 35563739  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
                  |||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||       |||||||||||    
T  35563740 --------------taaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 35563825  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||  |||||||||||  | |||||||||||||||| ||    
T  35563826 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcccggaaataatttgtgtttcccaa 35563925  T
Q  308 aaacaaacgccccctta 324  Q
    |||||||||||||||||    
T  35563926 aaacaaacgccccctta 35563942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 111 - 322
Target Start/End: Original strand, 38567513 - 38567725
Alignment:
Q  111 ttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn-ttgtaacttccaannnnnnnaggaatgtcaaat 209  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||           |||||||||||||       | ||||||||| |    
T  38567513 ttattcccatgtaaagagatggggatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaagaatgtcaagt 38567612  T
Q  210 tatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaa 309  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  38567613 tatttgccaaacacttttttgaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaa 38567712  T
Q  310 acaaacgccccct 322  Q
    |||||||||||||    
T  38567713 acaaacgccccct 38567725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 2001621 - 2001463
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||  |||||||||||||| ||||||||  |||||||||| || |||||||||||||||| |||||||||||||||| ||||     
T  2001621 gattatacccatgtttgttacgaggttgagaaaaaaatattcctgaatataaaggttcctaggaatggagtaacttctcataacttccattattcccata 2001522  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    ||||||||| |||| ||||| ||| |||||||||||| |||||||||||||||||||||    
T  2001521 aatttattcccatgaaaagatatgagaatgtgcattctcatgatattatgcatagattt 2001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 11661196 - 11661313
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  11661196 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 11661295  T
Q  108 aatttattctcatgtaaa 125  Q
    ||||||||| ||||||||    
T  11661296 aatttattcccatgtaaa 11661313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 9686489 - 9686360
Alignment:
Q  197 aggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataattt 296  Q
    ||||||||||| ||||||| |||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  9686489 aggaatgtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataattt 9686390  T
Q  297 gtgtttccaaaaaacaaacgcccccttagt 326  Q
    |||||||| |||||||||||||||||||||    
T  9686389 gtgtttcccaaaaacaaacgcccccttagt 9686360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 9686642 - 9686516
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    ||||||| |||||||||||| |||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  9686642 attatacccatgtttgttatgaggttgagaaaaaaatattcttgagtataaaggttcctgggaatggagtaacttcccataacttccattattcccatga 9686543  T
Q  109 atttattctcatgtaaagaaatgggaa 135  Q
    ||||||||  ||||||||| |||||||    
T  9686542 atttattcctatgtaaagagatgggaa 9686516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 11661354 - 11661477
Alignment:
Q  199 gaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgt 298  Q
    ||||||||| |||||||||||||||       |||||||||  ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  11661354 gaatgtcaagttatttgccaaacactttttttaacaaatacttaagaatcaaattttcatattttcattcccgagtatcttattcttgggaataatttgt 11661453  T
Q  299 gtttccaaaaaacaaacgccccct 322  Q
    |||||| |||||||||||||||||    
T  11661454 gtttcccaaaaacaaacgccccct 11661477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 24697636 - 24697547
Alignment:
Q  231 aacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgcccc 320  Q
    |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  24697636 aacaaatacccatgaatcaaattttcatattttcattcccatgtatgttattcctaggaataatttatgtttccccaaaacaaacgcccc 24697547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 1996400 - 1996314
Alignment:
Q  238 acccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccctta 324  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  1996400 acccaagaatcaaattttcatattttcgttcccggatatgttattcctgagaataatttgtgtttcccaaaaacaaacgccccctta 1996314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 43596347 - 43596252
Alignment:
Q  71 aatggagtaacttcccataacttccattatttccatgaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    |||| |||| |||| |||||||||||||||| |||||||||||||||| ||||||||  ||||||||||||||||| | ||||| |||||||||||    
T  43596347 aatgaagtatcttctcataacttccattattcccatgaatttattctcgtgtaaagagttgggaatgtgcattcccgtaatattctgcatagattt 43596252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 38567053 - 38567126
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaac 81  Q
    |||||||  |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  38567053 gattatatccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaac 38567126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 24697844 - 24697746
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaa-atattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||| |||||||| |||||| |||  |||||||||  |||||||| ||||||||||||||||||| |||||| |||||    
T  24697844 gattatacccatgtttgttatgaggtagagaaaaatatattcatggc-ataaaggttcttgggaatgaagtaacttcccataacttcgattattcccatg 24697746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 24697844 - 24697702
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaa-atattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||| |||||||| |||||| |||  |||||||||  |||||||| ||||||||||||||||||| |               
T  24697844 gattatacccatgtttgttatgaggtagagaaaaatatattcatggc-ataaaggttcttgggaatgaagtaacttcccataacttcga----------- 24697757  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatt 165  Q
       |||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  24697756 ---ttattcccatgtaaagagatgtgaatgtgcattcccatgatattctgcatagatt 24697702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 43595904 - 43595987
Alignment:
Q  9 gattatactcatgtttgttataaggttgag--aaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataa 90  Q
    |||||||| | |||||||||| ||||||||  |||||| | || ||||||||||||||  |||||||| |||||||| ||||||    
T  43595904 gattatacccgtgtttgttatgaggttgagggaaaaaaaaatcatgggtataaaggttcatgggaatgaagtaactttccataa 43595987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 25897813 - 25898133
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||    
T  25897813 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctaggaatggagtaacttcctataacttccattattcccatg 25897912  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt--nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtc 205  Q
    ||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       |||||||||    
T  25897913 aatatattcccatataaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaattttttcaggaatgtc 25898012  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||     
T  25898013 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttccc 25898112  T
Q  306 aaaaacaaacgcccccttagt 326  Q
    |||||||||||||||||||||    
T  25898113 aaaaacaaacgcccccttagt 25898133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 22213581 - 22213266
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tatt-cctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccat 106  Q
    |||||||  |||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||    
T  22213581 gattatatccatgtttgttatgaggttgagaaaaaaatatttcctgggtataaaggttcctgggaatggagtaacttcctataatttccattattcccat 22213482  T
Q  107 gaatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtc 205  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||          |||||||||||||       | |||||||    
T  22213481 gaatatattcccatgtaaagatatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaattttttcaagaatgtc 22213382  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||     
T  22213381 aagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttccc 22213282  T
Q  306 aaaaacaaacgccccc 321  Q
    ||||||||||||||||    
T  22213281 aaaaacaaacgccccc 22213266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 42393922 - 42394242
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||| ||||||||||| ||||||||  ||||||||||||||||||| |||||| |||||    
T  42393922 gattatacccatgtttattatgaggttgagaaaaaaatattcctgagtataaaggttcctgggaattaagtaacttcccataacttcaattattcccatg 42394021  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||          ||||||||| |||       | |||||||||    
T  42394022 aatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattt-aaaaaaaaattgtaactttcaatttttccatgaatgtcaa 42394120  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaa--------attttcatattttcattcccgagtatgttattcctaggaataatttgtg 299  Q
     |||||||||||||||       ||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  42394121 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcatattttcattcccgggtatgttattcctggaaataatttgtg 42394220  T
Q  300 tttccaaaaaacaaacgccccc 321  Q
    ||||| ||||||||||||||||    
T  42394221 tttcccaaaaacaaacgccccc 42394242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 30493787 - 30494084
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||               
T  30493787 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaagattcctgggaatggagtaacttcccataacttcca----------- 30493875  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt--nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtc 205  Q
       |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       |||||||||    
T  30493876 ---ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtc 30493972  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |     
T  30493973 aagttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatattattcctgggaataatttgtgttttcc 30494072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 30534130 - 30534427
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||               
T  30534130 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaagattcctgggaatggagtaacttcccataacttcca----------- 30534218  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt--nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtc 205  Q
       |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       |||||||||    
T  30534219 ---ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtc 30534315  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |     
T  30534316 aagttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatattattcctgggaataatttgtgttttcc 30534415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 13946278 - 13946428
Alignment:
Q  17 tcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaatttatt 115  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13946278 tcatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcctgagaatggagtaacttcccataacttccattatttccatgaatttatt 13946377  T
Q  116 ctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    | |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  13946378 cccatgtaaagagatgagaatgtgcattcccatgatattatgcatagattt 13946428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 26945961 - 26945660
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||              
T  26945961 gattatacccatgtttgttatgagattgagaaaaaaatattcctgggtataaaggttcctaggaatggagtaacttcccataacttccat---------- 26945872  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
        ||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||          |||||||||||||       |||||||||||    
T  26945871 ----tattcccatgtaaagagatgggaatgtgcagtcccataatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 26945776  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||   ||||||||| || | ||||||||||||||||  |    
T  26945775 gttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgttatttctggaaataatttgtgtttcccca 26945676  T
Q  308 aaacaaacgccccctt 323  Q
    ||||||||||||||||    
T  26945675 aaacaaacgccccctt 26945660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 26674355 - 26674055
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||              
T  26674355 gattatacccatgtttgttatgagattgagaaaaaaatattcctgggtataaaggttcctaggaatggagtaacttcccataacttccat---------- 26674266  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
        ||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||          |||||||||||||       |||||||||||    
T  26674265 ----tattcccatgtaaagagatgggaatgtgcagtcccataatattatgcatagattt-aaaaaaaaattgtaacttccaatttttccaggaatgtcaa 26674171  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||   ||||||||| || | ||||||||||||||||  |    
T  26674170 gttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgttatttctggaaataatttgtgtttcccca 26674071  T
Q  308 aaacaaacgccccctt 323  Q
    ||||||||||||||||    
T  26674070 aaacaaacgccccctt 26674055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 124 - 322
Target Start/End: Complemental strand, 36275734 - 36275534
Alignment:
Q  124 aagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn--ttgtaacttccaannnnnnnaggaatgtcaaattatttgccaaac 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||       ||||||||||| |||||||||||||    
T  36275734 aagatatgggaatgtgcattcccatgatattatgcatagattttttttaaaaaaattgtaacttccaatttttccaggaatgtcaagttatttgccaaac 36275635  T
Q  222 acnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccc 321  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  36275634 actttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctggaaataatttgtgtttcccaaaaacaaacgccccc 36275535  T
Q  322 t 322  Q
    |    
T  36275534 t 36275534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 11740658 - 11740533
Alignment:
Q  197 aggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataattt 296  Q
    ||||||||||| |||||||||||||||       ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||  || ||||||    
T  11740658 aggaatgtcaagttatttgccaaacactttttttaacaaatacacaggaatcaaattttcatattttcattcccgagtatgttatttctgagagtaattt 11740559  T
Q  297 gtgtttccaaaaaacaaacgccccct 322  Q
    ||||||||  ||||||||||||||||    
T  11740558 gtgtttccccaaaacaaacgccccct 11740533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 36275814 - 36275733
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataa 90  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  36275814 gattatacacatgtttgttatgaggttgagaaaaaatattcctgggtataaaggttcctcggaatggagtaacttcccataa 36275733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 11742121 - 11741969
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtat-aaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||  |||||||| ||||||||  |||||||||| |||||   |||    
T  11742121 gattatacccatgtttgttatgaggttgagaaaaaatattcctgggtataaaagattcatgggaatgaagtaactt-tcataacttcccttattcaaatg 11742023  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcata 161  Q
    ||||||||| || | |||||  | ||||||||||||  |||||| |||||||||    
T  11742022 aatttattcccaagaaaagaggttggaatgtgcattgtcatgatgttatgcata 11741969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 321
Target Start/End: Original strand, 13946468 - 13946579
Alignment:
Q  200 aatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtg 299  Q
    |||||||| ||||||||||||||        ||||||||||||||||||||||||||||        || || ||||||||||||| |||||||  | ||    
T  13946468 aatgtcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcat--------tctcgggtatgttattcctgggaataa--tatg 13946557  T
Q  300 tttccaaaaaacaaacgccccc 321  Q
    ||||| ||||||||||||||||    
T  13946558 tttcccaaaaacaaacgccccc 13946579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 20372333 - 20372653
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||    
T  20372333 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaattgagtaacttcccataacttccattattcccatg 20372432  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt----nnnnnnnnnnttgtaacttccaannnnnnnaggaatg 203  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||              |||||||||||||       |||||||    
T  20372433 aatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaattgtaacttccaatttttccaggaatg 20372532  T
Q  204 tcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
    |||| |||||||||||||||       ||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  20372533 tcaagttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttc 20372632  T
Q  304 caaaaaacaaacgccccctta 324  Q
    | |||||||||||||||||||    
T  20372633 ccaaaaacaaacgccccctta 20372653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 47266563 - 47266248
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  47266563 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacctcccataacttccattattcccatg 47266464  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaa--nnnnnnnaggaatgt 204  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||          |||||||||||||         ||||||||    
T  47266463 aatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaatttttttccaggaatgt 47266364  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| |||||| ||||||||       |||||||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  47266363 caagttattttccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtgtttcc 47266264  T
Q  305 aaaaaacaaacgcccc 320  Q
     |||||||||| ||||    
T  47266263 caaaaacaaacccccc 47266248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 30586360 - 30586057
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  30586360 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttctcataacttccattattcccatg 30586261  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
                  |||||| ||| ||||||||||||||||||||||||||||||||||          |||||||||||||       |||||||||||    
T  30586260 --------------taaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaattttttcaggaatgtcaa 30586175  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||    
T  30586174 gttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgttattcctggaaataatttgtgtttcccaa 30586075  T
Q  308 aaacaaacgcccccttag 325  Q
    ||||||||||||||||||    
T  30586074 aaacaaacgcccccttag 30586057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 49141852 - 49142154
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          
T  49141852 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattatt------ 49141945  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnt---tgtaacttccaannnnnnnaggaatgt 204  Q
            |||||||||||| ||||||||||  ||||||||||||||||||||||||||              ||||||||||||       ||||||||    
T  49141946 --------ctcatgtaaagagatgggaatgtatattcccatgatattatgcatagatttaaaaaaaaaaaaaatgtaacttccaattttttcaggaatgt 49142037  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  49142038 caagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataattagtgtttcc 49142137  T
Q  305 aaaaaacaaacgccccc 321  Q
     ||||||||||||||||    
T  49142138 caaaaacaaacgccccc 49142154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 31293320 - 31293020
Alignment:
Q  12 tatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaat 110  Q
    |||||||||||||||||  |||||||||||||| ||||| | ||||||||||||  || |||||||||||||||||||||||||||||||| |||||       
T  31293320 tatactcatgtttgttacgaggttgagaaaaaaatattcttcggtataaaggttcatgagaatggagtaacttcccataacttccattattcccatg--- 31293224  T
Q  111 ttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn-ttgtaacttccaannnnnnnaggaatgtcaaat 209  Q
               |||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||        |||||||||| |    
T  31293223 -----------taaagagatgggaatgtgcattcccatgatattatgcatagatttttaaaaaaaaattgtaacttccaattttttcgggaatgtcaagt 31293135  T
Q  210 tatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaa 309  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  31293134 tatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaa 31293035  T
Q  310 acaaacgccccctta 324  Q
    |||||||||||||||    
T  31293034 acaaacgccccctta 31293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 66 - 317
Target Start/End: Complemental strand, 41743379 - 41743126
Alignment:
Q  66 ctgggaatggagtaacttcccataacttccattatttccatgaatttattctcatgta--aagaaatgggaatgtgcattcccatgatattatgcataga 163  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||| ||| ||  |||| |||||||||||||||||||||||||||||||||||    
T  41743379 ctgggaatgaagtaacttcccataacttccattattcctatgaatttattcacatatataaagagatgggaatgtgcattcccatgatattatgcataga 41743280  T
Q  164 tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatatttt 263  Q
    |||          |||||||||||||       ||||||||||| |||||||||||||||       |||||||| ||||||||||||||||||||||||    
T  41743279 tttaaaaaaaaaattgtaacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatatttt 41743180  T
Q  264 cattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgc 317  Q
    |||| ||| ||||||||||||| | |||||||||||||||| ||||||||||||    
T  41743179 catttccgggtatgttattcctggaaataatttgtgtttcccaaaaacaaacgc 41743126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 44080151 - 44079874
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaa-atattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||  |||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||||     
T  44080151 gattatatccatgtttgttatgaggttgagaaaaatatattcctggatataaaggttcctgggaatggagtaacttcccataactttcattattcccata 44080052  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||||| ||||||||||          |||||||||||||       || ||| ||||    
T  44080051 aatttatttccatgtaaagagacgggaatgtgcattcccatgatattacgcatagatttaaaaaaaaaattgtaacttccaatttttccagtaatatcaa 44079952  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcct 285  Q
     ||||||| |||||||       |||||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  44079951 gttatttgtcaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgttattcct 44079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 326 - 442
Target Start/End: Complemental strand, 47639042 - 47638926
Alignment:
Q  326 tgataatccataacgaagcgaagaagaacattcatacctgcaaacctacataaagcttaatgaactgatgggtagcagccttgcaaagatcaatcttgca 425  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47639042 tgataatccataacgaagcgaagaagaacattcatacccgcaaacctaaataaagcttaatgaactgatgggtagcaaccttgcaaagatcaatcttgca 47638943  T
Q  426 agctgatatgtgggatc 442  Q
    |||||||||||||||||    
T  47638942 agctgatatgtgggatc 47638926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 22916572 - 22916730
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaagg-ttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| |||||||| | || || |||||| | |||||| ||| ||||||| ||||| |||||    
T  22916572 gattatactcatgtttgttatgaggttgagaaaaattattcctaggtataaaagattcctaggaatgaaataactttccagaacttcccttattcccatg 22916671  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    |||| |||| |||||||| |  ||||||||||||||||||||||||| |||||||||||    
T  22916672 aattgattcccatgtaaaaagttgggaatgtgcattcccatgatattctgcatagattt 22916730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 32031451 - 32031358
Alignment:
Q  231 aacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccctta 324  Q
    |||||||| |||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  32031451 aacaaatatccaagaatcaaattttcatattttcattcccagatatgttattcctaagaataatttgtgtttcccaaaaacaaacgccccctta 32031358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 43175134 - 43174979
Alignment:
Q  12 tatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaat 110  Q
    ||||| |||||||||||| || ||||||||||| ||||  | | |||||||||| ||||||||| |||||||| ||||||||| || |||| |||| |||    
T  43175134 tatacccatgtttgttatgagattgagaaaaaaatatttttagatataaaggttcctgggaatgaagtaactttccataactttcaatattcccattaat 43175035  T
Q  111 ttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    || |||  || |||||| ||||||||||||||| |||||||||| |||||||||||    
T  43175034 tttttcctatataaagagatgggaatgtgcatttccatgatattctgcatagattt 43174979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 31577514 - 31577426
Alignment:
Q  197 aggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcct 285  Q
    ||||||||||| |||||||| ||||||       ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  31577514 aggaatgtcaagttatttgctaaacactttttttaacaaatacccaagaatcaaatttttatattttcatttccgagtatgttattcct 31577426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 31577688 - 31577612
Alignment:
Q  18 catgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttc 94  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||| |||| |||| ||||||||||||||| |||    
T  31577688 catgtttgttatgaggttgagaaaaaatatttctgggtttaaaggttcctggaaatgaagtaacttcccataatttc 31577612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 27620193 - 27620273
Alignment:
Q  244 gaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccctta 324  Q
    |||||||||||||||||||||||| ||   |||| |||||||  |||||||||||||||||  ||||||||||||||||||    
T  27620193 gaatcaaattttcatattttcatttccagatatgctattcctgtgaataatttgtgtttccctaaaacaaacgccccctta 27620273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 41743420 - 41743375
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctggg 54  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  41743420 gattatacacatgtttgttatgaggttgagaaaaaatattcctggg 41743375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 8047754 - 8047845
Alignment:
Q  17 tcatgtttgttataaggttgag-aaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||| |||||||| ||||||||||  | ||||| ||||||  ||| |||| ||||||||| |||||||||| ||||| |||||    
T  8047754 tcatgtttgttatgaggttgagaaaaaaatatttttaggtatgaaggttcttggaaatgaagtaacttctcataacttcctttattcccatg 8047845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 27620063 - 27620118
Alignment:
Q  111 ttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
    |||||||||||||||||  ||| ||||||||||||||| ||||| |||||||||||    
T  27620063 ttattctcatgtaaagaggtggaaatgtgcattcccataatattctgcatagattt 27620118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 27619994 - 27620040
Alignment:
Q  18 catgtttgttataaggttgagaaaaaatattcctgggtataaaggtt 64  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  27619994 catgtttgttatgaggatgagaaaaaatattcgtgggtataaaggtt 27620040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 2659723 - 2659790
Alignment:
Q  234 aaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgttt 302  Q
    |||||| || ||||||||||| |||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  2659723 aaatacacaggaatcaaattt-catattttcattcttgagtaagttattcctaaaaataatttgtgttt 2659790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 22916796 - 22916884
Alignment:
Q  231 aacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccc 319  Q
    ||||||||| || |||||||| |||||||||||||| |||   ||| ||||||| | ||||||||||||||| |  ||||||| |||||    
T  22916796 aacaaatactcaggaatcaaaatttcatattttcatccccagatatattattccaatgaataatttgtgttttcccaaaacaagcgccc 22916884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 43174945 - 43174898
Alignment:
Q  231 aacaaatacccaagaatcaaattttcatattttcattcccgagtatgt 278  Q
    |||||||| | |||||||||||||| ||| ||||||||||||||||||    
T  43174945 aacaaatatctaagaatcaaatttttataatttcattcccgagtatgt 43174898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 45360486 - 45360167
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||  |||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45360486 gattatatccatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcctgggaatggagtaacttcccataacttccattatttccatg 45360387  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||       ||||||||||    
T  45360386 aatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 45360287  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaa 306  Q
    | |||||||||||||||       ||||||||||||||||||||||||| |||||||||||||   ||||||||||||| |||||||||||||||||| |    
T  45360286 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttgatattttcattccgaggtatgttattcctgggaataatttgtgtttccca 45360187  T
Q  307 aaaacaaacgcccccttagt 326  Q
    ||||||||||||||||||||    
T  45360186 aaaacaaacgcccccttagt 45360167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 19565479 - 19565162
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||||||| |||| |    
T  19565479 gattatacccatgtttgttatgaggttgagaaaaaatattcctgggcataaaggttcgtgggaatagagtaacttcccataacttccattattcccataa 19565380  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||           |||||||||||||       |||||||||||    
T  19565379 atttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcataaatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 19565280  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataa-tttgtgtttccaa 306  Q
     |||||||||||||||       || |||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||| ||||||||| | |    
T  19565279 gttatttgccaaacactttttttaagaaatacccaagaatcaaattttcatattttcatttccgaatatgttattcttgggaataattttgtgttttcca 19565180  T
Q  307 aaaacaaacgccccctta 324  Q
    ||||||||||||||||||    
T  19565179 aaaacaaacgccccctta 19565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 40125727 - 40125432
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||    
T  40125727 gattatacccatgtttgttatgaggttgagaaaaaaatattccttggtataaaggttcctgagaatcgagtaacttcccataacttccattattcccatg 40125628  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt-nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||           |||||||||||||       ||||||||||    
T  40125627 aatttattcccatgtaaagatataggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 40125528  T
Q  207 aattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgttt 302  Q
    | |||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  40125527 agttatatgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttgttcctgggaatagtttgtgttt 40125432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 5555508 - 5555196
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| ||||||| |||| |||||| ||||||| |||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||| |||||    
T  5555508 gattatacccatgtttattatcaggttgcgaaaaaaatattcctgggtataaaggttcctgggagtggagtaacctcctataacttccattattcccatg 5555409  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||          |||||||||||||       || ||||||||    
T  5555408 aatttattcgcatgtaaagagatgagaatgtgcattcccatgatattatgcatagattttaaaaaaaaattgtaacttccaatttttccagaaatgtcaa 5555309  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     ||||| |||||||||       |||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||  ||||||||||||||||| ||    
T  5555308 gttattcgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgggtatgttatttctgagaataatttgtgtttcccaa 5555209  T
Q  308 aaacaaacgcccc 320  Q
    |||||||||||||    
T  5555208 aaacaaacgcccc 5555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 21620355 - 21620060
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||| ||||     
T  21620355 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgagtataaaggttcctaggaatagagtaacttcccataacttccattattcccata 21620256  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcataga-tttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtca 206  Q
    || |||||| |||||||||| |||||||||| |||||||||||||||||| ||||| |||          |||||||||||||       ||||||||||    
T  21620255 aacttattcccatgtaaagagatgggaatgtacattcccatgatattatgtatagattttaaaaaaaaaattgtaacttccaatttttctaggaatgtca 21620156  T
Q  207 aattatttgccaaaca-cnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtt 301  Q
    | |||||||| ||||| |       ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  21620155 agttatttgctaaacacctttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgttattcctgggaataatttgtgtt 21620060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 43068921 - 43069215
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  43068921 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgg-tataaaggttcctgggaatggagtaacttcccataacttccatcattcccatg 43069019  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
                  |||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||       || ||||||||    
T  43069020 --------------taaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaattttttcagaaatgtcaa 43069105  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
    |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||    
T  43069106 attatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaataatttgtgtttttcaa 43069205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 14236692 - 14236398
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||              
T  14236692 gattatacccatgtttgttatgaggttgagaaaaaaatattcctaggtataaaggttcctgggaatagagtaacttcccataacttccat---------- 14236603  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt---nnnnnnnnnnttgtaacttccaannnnnnnaggaatgt 204  Q
        ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||             |||||||||||||       ||||||||    
T  14236602 ----tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaaattgtaacttccaatttttccaggaatgt 14236507  T
Q  205 caaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||| |||||||||||||||       ||||||||||||||||||||        ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  14236506 caagttatttgccaaacactttttttaacaaatacccaagaatcaa--------attttcattcccgggtatgttattcctgggaataatttgtgtttcc 14236415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 124 - 324
Target Start/End: Original strand, 32550356 - 32550555
Alignment:
Q  124 aagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaaattatttgccaaacac 223  Q
    |||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||       ||||||||||| |||||||||||||||    
T  32550356 aagatatgggaatgtgcattcccatgatattatgcatagatttttaaaaaaa-ttgtaacttccaatttttccaggaatgtcaagttatttgccaaacac 32550454  T
Q  224 nnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccctt 323  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||||||||    
T  32550455 tttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgtgaattatttgtgtttcccaaaaacaaacgccccctt 32550554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 25473720 - 25473837
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25473720 gattatacccatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataacttccattattcccatg 25473819  T
Q  108 aatttattctcatgtaaa 125  Q
    ||| ||||| ||||||||    
T  25473820 aatatattcccatgtaaa 25473837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 3656816 - 3656524
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||  ||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||||||              
T  3656816 gattataccaatgtttgttatgaggttgagaaaaaaatattcctgggtataaaggttcatgggaatggagtaacttctcataacttccat---------- 3656727  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt--nnnnnnnnnnttgtaacttccaannnnnnnaggaatgtc 205  Q
        ||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||            ||||||||| |||       |||||||||    
T  3656726 ----tattcccatgtacagagatgggaatatgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaactttcaatttttccaggaatgtc 3656631  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||||||||||       |||||| |||||||||||||        |||||||||||| | |||||||||||| ||||||||||||||||||     
T  3656630 aagttatttgccaaacactttttttaacaaacacccaagaatcaa--------attttcattccctaatatgttattcctgggaataatttgtgtttccc 3656539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 4643885 - 4643603
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    |||||||| ||| |||||||  ||||||||||||||||||| || |||||||| || |||| |||| ||||| ||| |||||||||||||||| |||||     
T  4643885 gattatacccatatttgttacgaggttgagaaaaaatattcttgagtataaagattcctggtaatgaagtaatttctcataacttccattattcccatg- 4643787  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn-ttgtaacttccaannnnnnnaggaatgtcaa 207  Q
                 |||||| |||||||||||||||||||||||||| | ||||  |||           |||||||||||||       |||||||||||    
T  4643786 -------------taaagagatgggaatgtgcattcccatgatattctacataatttttttaaaaaaaattgtaacttccaattttcttaggaatgtcaa 4643700  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcc 304  Q
    |||||| |||||||||       |||||||||||| |||||||||||||||||||||||||| |  |||||||||| | ||||||||||||||||||    
T  4643699 attattcgccaaacactttttttaacaaatacccatgaatcaaattttcatattttcattcctggatatgttattcttgggaataatttgtgtttcc 4643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 25304207 - 25304347
Alignment:
Q  18 catgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaatttattc 116  Q
    |||||||||||| |||||||||||| |||||||||  ||| ||||||   || ||||| ||||||||| |||||||||  ||||| ||||||||||||||    
T  25304207 catgtttgttatgaggttgagaaaaaaatattcctaagtaaaaaggtacttgtgaatgaagtaacttctcataacttctcttattcccatgaatttattc 25304306  T
Q  117 tcatgtaaagaaatggg-aatgtgcattcccatgatattat 156  Q
    ||||||||  || |||| |||||||||||||||||||||||    
T  25304307 tcatgtaagaaagtgggaaatgtgcattcccatgatattat 25304347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 32550275 - 32550357
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataa 90  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  32550275 gattatacccatgtttattatgaggttgagaaaaaaatattcctgggtataaaggttcctgggaatggagtaacttcccataa 32550357  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 6693928 - 6694028
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaa-aatattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||  ||  || ||||| ||||||||| |||| ||| |||||||||||||    
T  6693928 gattatactcatgtttgttatgaggttgtgaaaaaaatattcctaggtataaaaattcatgtgaatgaagtaacttctcatacctttcattatttccatg 6694027  T
Q  108 a 108  Q
    |    
T  6694028 a 6694028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 16296644 - 16296792
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    |||||||  ||| |||||||| |||||| ||||||| |||||||  |||||||||||  | |||||  | ||||||   ||||||||| ||||| |||||    
T  16296644 gattatatccatatttgttatgaggttgggaaaaaaatattcctaagtataaaggttcttcggaattaattaactttttataacttcccttattcccatg 16296743  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattat 156  Q
    |||||||| ||| ||||  || ||| |||||||||||||||||||||||    
T  16296744 aatttattttcacgtaagaaagtggaaatgtgcattcccatgatattat 16296792  T

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Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 3027813 - 3027742
Alignment:
Q  232 acaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
    ||||||||||| ||||||||||||||||||||||||||   ||| |||||||||  ||||||||||||||||    
T  3027813 acaaatacccaggaatcaaattttcatattttcattccgaggtaagttattcctgagaataatttgtgtttc 3027742  T

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Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 25304381 - 25304453
Alignment:
Q  231 aacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
    |||||||||||| |||| | ||||| |||||||| |||||||||| |||||| || |||||||||||||||||    
T  25304381 aacaaatacccaggaattatatttttatattttcgttcccgagtaagttatttctgggaataatttgtgtttc 25304453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 16296884 - 16296932
Alignment:
Q  255 tcatattttcattcccgagtatgttattcctaggaataatttgtgtttc 303  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||    
T  16296884 tcatattttcattcccgaataagttattcctaagaataatttgtgtttc 16296932  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 35371592 - 35371668
Alignment:
Q  9 gattatactcatgtttgttataaggttgagaaaaaatattcctgggtataaaggttactgggaatggagtaacttcc 85  Q
    |||||||| ||||||||||||||||||  ||||| ||||||||| ||||| | ||| ||||||||| |||| |||||    
T  35371592 gattatacccatgtttgttataaggttttgaaaatatattcctgagtatagacgttcctgggaatgaagtaccttcc 35371668  T

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Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 6694023 - 6694185
Alignment:
Q  145 ccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaa- 243  Q
    ||||||||||||||||||||||          |||||||||||||       ||||||||||| |||||||| ||||||       ||||||||||| |     
T  6694023 ccatgatattatgcatagattttttaaaaaaattgtaacttccaattttttcaggaatgtcaagttatttgctaaacactttttttaacaaataccccac 6694122  T
Q  244 gaatcaaattttcatattttcattccc--gagtatgttattcctaggaataatttgtgtttcc 304  Q
    ||||||||||||||||||||||||| |  | ||   |||||||| ||||||||||||||||||    
T  6694123 gaatcaaattttcatattttcattctcaggggttgtttattcctgggaataatttgtgtttcc 6694185  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 3028036 - 3027955
Alignment:
Q  9 gattatactcatgtttgttataaggttg-agaaaaaatattcctgggtataaaggttactgggaatggagtaacttcccata 89  Q
    |||||||| |||||||||||| |||||| | |||||| ||||||  || |||||||| |||  ||| |||||||||||||||    
T  3028036 gattatacacatgtttgttatgaggttgaaaaaaaaaaattcctaagtttaaaggtttctgataattgagtaacttcccata 3027955  T

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Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 55 - 322
Target Start/End: Complemental strand, 4653841 - 4653574
Alignment:
Q  55 tataaaggttactgggaatggagtaacttcccataacttccattatttccatgaatttattctcatgtaaagaaatgggaatgtgcattcccatgatatt 154  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  4653841 tataaaggttcctgggaatggagtaacttcccataacttccattattcccatgaacttattcccatgtaaagagatgggaatgtgcattcccatgatatt 4653742  T
Q  155 atgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattt 254  Q
    ||||||||||||          |||||||||||||       ||||||||||| |||||||||||||||       |||||||||| |||||||||||||    
T  4653741 atgcatagattttaaaaaaaaattgtaacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacctaagaatcaaattt 4653642  T
Q  255 tcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgccccct 322  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  4653641 tcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 4653574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 33756691 - 33756388
Alignment:
Q  11 ttatactcatgtttgttataaggttgagaaaaaa---tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatg 107  Q
    ||||||||||||||||||| ||||||||||||||   ||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||          
T  33756691 ttatactcatgtttgttatgaggttgagaaaaaaaaatattcatgggtacaaaggtt-ctgggaatgaagtaacttcccataacttccattatt------ 33756599  T
Q  108 aatttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnnttgtaacttccaannnnnnnaggaatgtcaa 207  Q
            |||||||||| | ||||||||||||||||||||||||||||||||| ||||           ||||||||||||       |||||||||||    
T  33756598 --------ctcatgtaaa-agatgggaatgtgcattcccatgatattatgcatatatttaaaaaaaaa--tgtaacttccaatttttttaggaatgtcaa 33756510  T
Q  208 attatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaa 307  Q
     |||||||||||| ||       ||||||||||| |||||||||||||||||||||||||||||  |||||||||||| | |||||||||||||||| ||    
T  33756509 gttatttgccaaatactttttttaacaaatacccgagaatcaaattttcatattttcattcccggatatgttattcctggaaataatttgtgtttcccaa 33756410  T
Q  308 aaacaaacgcccccttagtgat 329  Q
    |||||||||| |||||||||||    
T  33756409 aaacaaacgcgcccttagtgat 33756388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 24765507 - 24765358
Alignment:
Q  18 catgtttgttataaggttgagaaaaaat-attcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatgaatttattc 116  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||| || ||| ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  24765507 catgtttgttatgaggctgagaaaaaattattcctgggtataaagattcctgagaatgaagtaacttcccataacttccattattcccatgaacttattc 24765408  T
Q  117 tcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagattt 166  Q
     |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  24765407 ccatgtaaagagatgggaatgtgcattcccatgatattttgcatagattt 24765358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 24765286 - 24765199
Alignment:
Q  231 aacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttccaaaaaacaaacgcc 318  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||||||    
T  24765286 aacaaatatccaggaatcaaattttcatattttcattcccgagtatattattcctgggaataatttgtgtttccccaaaacaaacgcc 24765199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 59317 - 59015
Alignment:
Q  10 attatactcatgtttgttataaggttgagaaaaaa-tattcctgggtataaaggttactgggaatggagtaacttcccataacttccattatttccatga 108  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||| |||||     
T  59317 attatacccatgtttgttatgaggttgagaaaaaaatattcctgggtttaaaggttcatgggaatggagtaacttcccataacttccattattcccatg- 59219  T
Q  109 atttattctcatgtaaagaaatgggaatgtgcattcccatgatattatgcatagatttnnnnnnnnnn---ttgtaacttccaannnnnnnaggaatgtc 205  Q
                 |||||| ||| |||||| |||||||||||||||||||||||||||             |||||||||||||       ||||| |||    
T  59218 -------------taaagagatgagaatgttcattcccatgatattatgcatagatttttaaaaaaaaaaattgtaacttccaatttttccaggaacgtc 59132  T
Q  206 aaattatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctaggaataatttgtgtttcca 305  Q
    || |||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||     
T  59131 aagttatttgcaaaacacttttcttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcccgggaataatttgtgtttccc 59032  T
Q  306 aaaaacaaacgccccct 322  Q
    |||||||||||||||||    
T  59031 aaaaacaaacgccccct 59015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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