View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_24 (Length: 460)
Name: NF18317_high_24
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 147 - 451
Target Start/End: Complemental strand, 13849547 - 13849242
Alignment:
| Q |
147 |
tcaaataggtgggtcccaccacttttagctctcttctctcatatgcgaagaaagagtgaagaaagtgnnnnnnnccttacttttccatttttaccctcgt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13849547 |
tcaaataggtgggtcccaccacttttagctctcttctctcatatgcgaagaaagagtgaagaaagtgtttttttccttacttttccatttttaccctcgt |
13849448 |
T |
|
| Q |
247 |
cactctcggtggtttcctttctcataacttcctgttattgttgtccacttccatagttccatgactgactttcaccactagatctatcatctctacttcc |
346 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13849447 |
cactctcggtggtttcctttctcataacttcatgttattgttgtccacttccatagttccataactgactttcaccactagatctatcatctctacttcc |
13849348 |
T |
|
| Q |
347 |
cctaagaaaccannnnnnnacccattgtaagtgtcttttctacctgtggggtgggtcaaaactaagaaaatttggtttcttaaatttaataaca-taatg |
445 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
13849347 |
cctaagaaaccatttttttacccattgtaagtgtcttttctacctgtggagtgggtcaaaacttagaaaatttggtttcttaaatttaataacagtaatg |
13849248 |
T |
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| Q |
446 |
cctatg |
451 |
Q |
| |
|
|||||| |
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|
| T |
13849247 |
cctatg |
13849242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 47298400 - 47298535
Alignment:
| Q |
149 |
aaataggtgggtcccaccacttttagctctcttctctcatatgcgaagaaagagtgaagaaagtg-nnnnnnnccttacttttccatttttaccctcgtc |
247 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
47298400 |
aaatagatgggtcccaccacttttagctctcttctctcatatgcgaagaaagagtgatgaaagtgttttttttccttacttttccatttttaccatcgtc |
47298499 |
T |
|
| Q |
248 |
actctcggtggtttcctttctcataacttcctgtta |
283 |
Q |
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||| ||| | |||||||||||||||||||| ||||| |
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| T |
47298500 |
actgtcgattgtttcctttctcataacttcatgtta |
47298535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 148 - 408
Target Start/End: Original strand, 28477458 - 28477705
Alignment:
| Q |
148 |
caaataggtgggtcccaccacttttagctctcttctctcatatgcgaagaaagagtgaagaaagtgnnnnnnnccttacttttccatttttaccctcgtc |
247 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |
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| T |
28477458 |
caaatagatgggtcccatcacttttagctctcttctctcatatgcgaagaaag-----------tgtttttttccttacttttccatttttacccttgta |
28477546 |
T |
|
| Q |
248 |
actctcggtggtttcctttctcataacttcctgttattgttgtccacttccatagttccatgactgactttcaccactagatctatcatctctacttccc |
347 |
Q |
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|||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
28477547 |
actctcggtggtttcctttctcataacttc-tgttttt-ttgtccatttccatagttccataactggtttgcaccactagatctatcatctctacttccc |
28477644 |
T |
|
| Q |
348 |
ctaagaaaccannnnnnnacccattgtaagtgtcttttctacctgtggggtgggtcaaaac |
408 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
28477645 |
ctaagaaaccattttttaacccattgtaagtgtcttttctacttgtggagtgggtcaaaac |
28477705 |
T |
|
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