View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_27 (Length: 452)
Name: NF18317_high_27
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 10614463 - 10614887
Alignment:
| Q |
13 |
catcatcaaatatccacttaatcttctcttctttctctaagtcaaagcaacctttgcagtcataggaattaccaggctcattctttctatcaacaagaca |
112 |
Q |
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| T |
10614463 |
catcatcaaatatccacttaatcttttcttctttctctaagtcaaagcaacctttgcagtcataggaattaccaggctcattctttctatcaacaagaca |
10614562 |
T |
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| Q |
113 |
ctggtaactcttacaactataaggctcccagataatgcttgtatctggtggagttgtccaaaggctatccggtaaaggtgttggctctacataattcatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10614563 |
ctggtaactcttacaactataaggctcccagataatgcttgtatctggtggagttgtccaaaggctatccggtaaaggtgttggctctacataattcatc |
10614662 |
T |
|
| Q |
213 |
ggagactttgggtggcatctccgacgaggtagtggttcacaccctttgagtatgagtccttgcgaaagtacttcatctacaggacattcccctccaatgt |
312 |
Q |
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| T |
10614663 |
ggagactttgggtggcatctccgacgaggtagtggttcacaccctttgagtatgagtccttgcgaaagtacttcatctacaggacattcccctccaatgt |
10614762 |
T |
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| Q |
313 |
tgtacgtcatatattgctttaactcctcattgagcctcaagcaggcttcaccaataggcatgtgaatctcatctgacccgatcttcggtgagtacccata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10614763 |
cgtacgtcatatattgctttaactcctcattgagcctcaagcaggcttcaccaatagtcatgtgaatctcatctgacccgatcttcggtgagtacccata |
10614862 |
T |
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| Q |
413 |
agggagcttgtgagggccaagtgca |
437 |
Q |
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| T |
10614863 |
agggagcttgtgagggccaagtgca |
10614887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 10611033 - 10611457
Alignment:
| Q |
13 |
catcatcaaatatccacttaatcttctcttctttctctaagtcaaagcaacctttgcagtcataggaattaccaggctcattctttctatcaacaagaca |
112 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10611033 |
catcatcaaatatccacttaatcttttcttctttctctaagtcaaagcaacttttgcagtcataggaattaccaggctcattctttctatcaacaagaca |
10611132 |
T |
|
| Q |
113 |
ctggtaactcttacaactataaggctcccagataatgcttgtatctggtggagttgtccaaaggctatccggtaaaggtgttggctctacataattcatc |
212 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||| || |||||||| ||||||| |||||||||||||| ||||||||||||||||| || |
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| T |
10611133 |
ctggtaacttttacaactataaggctcccagataacgcttgtgtccggtggagtcatccaaagactatccggtaaaggcgttggctctacataatttgtc |
10611232 |
T |
|
| Q |
213 |
ggagactttgggtggcatctccgacgaggtagtggttcacaccctttgagtatgagtccttgcgaaagtacttcatctacaggacattcccctccaatgt |
312 |
Q |
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| T |
10611233 |
agagacttcgagtggcatctccgacgaggtaacggttcacacccttttagtataagtccttgtgaaagtacatcatctacaggacattcccctccaatgt |
10611332 |
T |
|
| Q |
313 |
tgtacgtcatatattgctttaactcctcattgagcctcaagcaggcttcaccaataggcatgtgaatctcatctgacccgatcttcggtgagtacccata |
412 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| | | |
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| T |
10611333 |
catatgtcatatattgctttaactcctcatgaagcctcaagcaggcttcaccaacaggcatgtaaatctcccctgacccgatcttcggtgagtactcgaa |
10611432 |
T |
|
| Q |
413 |
agggagcttgtgagggccaagtgca |
437 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
10611433 |
agggagcttgtgagggccaagtgca |
10611457 |
T |
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