View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_28 (Length: 447)
Name: NF18317_high_28
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_28 |
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| [»] scaffold0385 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 31140258 - 31140094
Alignment:
| Q |
1 |
gtaggattgtgcataatcctatcctaattattccgtgtaagaataatttgtaattccttgttgtacttatacccttttatttattcttgagtacatgttg |
100 |
Q |
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| T |
31140258 |
gtaggattgtgcataatcctatcctaattattccgtgtaagaataatttgtaattccttgttgtacttatacccttttatttattcttgagtacatgttg |
31140159 |
T |
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| Q |
101 |
agaaagttaaagaaccatttcactttgtttatgttttggggtagaaacttcattccaatctttaa |
165 |
Q |
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| T |
31140158 |
agaaagttaaagaaccatttcactttgtttatgttttggggtagaaacttcattccaatctttaa |
31140094 |
T |
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 25051564 - 25051692
Alignment:
| Q |
277 |
attaaaacctgtggggcccactgnnnnnnnagtcttcccattgttgccaagaaacaagagagagagttgcaatatttactattttccaattatgcccctt |
376 |
Q |
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| T |
25051564 |
attaaaacctgtggggcccactatttttagagtcttctcatggatgggaagaaataggggagagagttccaatatttcttatcttccaattatgcccctt |
25051663 |
T |
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| Q |
377 |
tgttgcattaggaaaagacaaaaacgtaa |
405 |
Q |
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| T |
25051664 |
cattgcatgaggaaaagacaaaaacgtaa |
25051692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 411
Target Start/End: Original strand, 11314948 - 11315080
Alignment:
| Q |
278 |
ttaaaacctgtggggcccactgnnnnnnnagtcttcccattgttgccaagaaacaagagagagagttgcaatatttactattttccaattatgccccttt |
377 |
Q |
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| T |
11314948 |
ttaaaacctgtgggacccactgtttttttagccttcccatggatgagaagaaacaggggagagaattgcaatatttgttattttccaattatgcccctct |
11315047 |
T |
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| Q |
378 |
gttgcattaggaaaagacaaaaacgtaaatataa |
411 |
Q |
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| T |
11315048 |
attgca-taaaaaaagacaaaaacgcaaatataa |
11315080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 11181 - 11250
Alignment:
| Q |
336 |
gagagagttgcaatatttactattttccaattatgcccctttgttgcattaggaaaagacaaaaacgtaa |
405 |
Q |
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| T |
11181 |
gagagagttccaatatttcttatcttccaattataccccttcattgcatgaggaaaagacaaaaacgtaa |
11250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 30669709 - 30669782
Alignment:
| Q |
326 |
agaaacaagagagagagttgcaatatttactattttccaattatgcccctttgttgcattaggaaaagacaaaa |
399 |
Q |
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| T |
30669709 |
agaaacaggcgagagagttgcaatttttgcaattttccaattatgcccttccattgcatgaagaaaagacaaaa |
30669782 |
T |
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