View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_30 (Length: 428)
Name: NF18317_high_30
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 16903061 - 16902836
Alignment:
| Q |
17 |
ggtgtaagcttaaatgtttttcttttgatttggtatcaaatgattatatatgctccagtattaatttaagtaaataagtgattgaatgttactgacatgt |
116 |
Q |
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| T |
16903061 |
ggtgtaagcttaaatgtttttcttttgatttggtatcaaatgattatatatgctccagtattaatttaagtaaataagtgattgaatgttactgacatgt |
16902962 |
T |
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| Q |
117 |
gtcagactccgggcatacctaccttcgttttaaagtgtcgatgctacgtatcatatatgtatcgagttgataaatgaaggaaatgtcagggtaaacagag |
216 |
Q |
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| T |
16902961 |
gtcagactccggacatatctaccttcgttttaaagtgtcgatgctacgtaccatatatgtatggagttgataaatgaaggaaatgtcagggtaaacagag |
16902862 |
T |
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| Q |
217 |
tttgatccacgtgaaagtttatcatc |
242 |
Q |
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| T |
16902861 |
tttgatccatgtgaaagtttatcatc |
16902836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 276 - 424
Target Start/End: Complemental strand, 16902806 - 16902659
Alignment:
| Q |
276 |
aacggcattttaaattttagttcagacccttgaggtcatgattttcttgtattttatttattgtatctgactatctgctgataatcagaaaaaagaacaa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16902806 |
aacggcattttaaattttagttcagacccttgaggtcatgattttct-gtattttatttattgtatctgactatctgctgataatcagaaaaaagaacaa |
16902708 |
T |
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| Q |
376 |
atttattttcttttcacctttttaaaacaatttaatttgtgtacacagt |
424 |
Q |
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| T |
16902707 |
atttattttcttttcacctttttaaaacaatttaatttgtgtacacagt |
16902659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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