View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_35 (Length: 415)

Name: NF18317_high_35
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_35
NF18317_high_35
[»] chr5 (3 HSPs)
chr5 (1-399)||(39732211-39732609)
chr5 (57-111)||(32676875-32676929)
chr5 (74-113)||(40837665-40837704)
[»] chr2 (3 HSPs)
chr2 (66-111)||(32201079-32201124)
chr2 (66-111)||(9929492-9929537)
chr2 (70-111)||(26575930-26575971)
[»] chr7 (5 HSPs)
chr7 (66-112)||(44572669-44572715)
chr7 (66-111)||(27616186-27616231)
chr7 (70-111)||(8799619-8799660)
chr7 (66-113)||(45216171-45216216)
chr7 (74-111)||(10678212-10678249)
[»] chr8 (2 HSPs)
chr8 (68-112)||(15850714-15850758)
chr8 (1-39)||(4770480-4770518)
[»] chr3 (1 HSPs)
chr3 (66-114)||(43922199-43922247)
[»] chr1 (3 HSPs)
chr1 (66-110)||(23431728-23431772)
chr1 (68-111)||(10171701-10171744)
chr1 (66-111)||(32740711-32740756)
[»] chr6 (1 HSPs)
chr6 (66-109)||(12843766-12843809)
[»] chr4 (2 HSPs)
chr4 (66-111)||(54305517-54305562)
chr4 (66-111)||(658677-658722)


Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 39732211 - 39732609
Alignment:
Q  1 aaataaataaatttgtagcggtgtcggtgtccaatgttttttgcatttatttagtagtgtcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtcc 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732211 aaataaatatatttgtagcggtgtcggtgtccaatgttttttgcatttatttagtagtgtcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtcc 39732310  T
Q  101 atgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatgtgggcttattttggtatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732311 atgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatgtgggcttattttggtatat 39732410  T
Q  201 ggttcatgaacttcaaaatcatattcacaaactcaagacatatacaccaatcatgttcatgtacttctttagccattctacattgctggactaagcatct 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39732411 ggttcatgaacttcaaaatcatattcacaaactcatgacatatacaccaatcatgttcatgtacttctttagccattctacattgctggactaaacatct 39732510  T
Q  301 gcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcatttatttttatcaacatta 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39732511 gcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcatttatttttatgaacatta 39732609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 32676875 - 32676929
Alignment:
Q  57 gtgtcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  32676875 gtgtcgacgtgtcagtgtcgtgtcaggtgtccgtgtcggagtccatgcttcatag 32676929  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 40837704 - 40837665
Alignment:
Q  74 tcgtgtcaggtgttcgtgtcggagtccatgcttcataggt 113  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  40837704 tcgtgtcaggtgtccgtgtcggagtccatacttcataggt 40837665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 32201079 - 32201124
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32201079 tgtcagtgtcgtgtcaggtgttcgtgttggagtccatgcttcatag 32201124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 9929537 - 9929492
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||    
T  9929537 tgtcagtgtcgtgtcaagtgtttgtgtcgtagtccatgcttcatag 9929492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 26575971 - 26575930
Alignment:
Q  70 agtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  26575971 agtgttgtgtcaggtgtccgtgtcggagtccatgcttcatag 26575930  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 44572669 - 44572715
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 112  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  44572669 tgtcagtgtcgtgtcaggagtccgtgtcggagtccatgcttcatagg 44572715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 27616231 - 27616186
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27616231 tgtcagtatcgtgtcaggtgtacgtgtcggagtccatgcttcatag 27616186  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 8799660 - 8799619
Alignment:
Q  70 agtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  8799660 agtgtcgtgtcaggtgtccgtgtcggagtccatgcgtcatag 8799619  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 45216171 - 45216216
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggt 113  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||||    
T  45216171 tgtcagtgtcgtgtcaggtgtccgtgt--gagtccatgcttcataggt 45216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 10678249 - 10678212
Alignment:
Q  74 tcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  10678249 tcgtatcaggtgtccgtgtcggagtccatgcttcatag 10678212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 15850714 - 15850758
Alignment:
Q  68 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 112  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  15850714 tcagtgtcgtgtcaggtgtccgtgtcggagtccatgtttcatagg 15850758  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4770480 - 4770518
Alignment:
Q  1 aaataaataaatttgtagcggtgtcggtgtccaatgttt 39  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  4770480 aaattaataaatttgtaacggtgtcggtgtccaatgttt 4770518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 43922199 - 43922247
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggta 114  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  43922199 tgtcagtgtcgtgtcaggtatctgtgtcggagtccatgcttcataggta 43922247  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 23431772 - 23431728
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcata 110  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  23431772 tgtcagtgtcgtatcaggtgtccgtgtcggagtccatgcttcata 23431728  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 10171701 - 10171744
Alignment:
Q  68 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  10171701 tcagtgtcgtgtccggtgtccgtgttggagtccatgcttcatag 10171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 32740756 - 32740711
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  32740756 tgtcagtgtcgtgtcagatgttcgtgtcgaagtctgtgcttcatag 32740711  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 12843809 - 12843766
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcat 109  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  12843809 tgtcagtgtcgtgtcaagtgtccgtgtcggagtccatgcttcat 12843766  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 54305562 - 54305517
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  54305562 tgtcagtgttgtgtcaggtgtccgtgttggagtccatgcttcatag 54305517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 658677 - 658722
Alignment:
Q  66 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 111  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||||    
T  658677 tgtcagtgtcgtgtcgggtgtccatgtcggagtccgtgcttcatag 658722  T

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