View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_37 (Length: 406)
Name: NF18317_high_37
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 34671097 - 34670720
Alignment:
| Q |
8 |
cgaagaatatctgggctgcacagttgcaaaaaatgttggtaaaaaccaggattaaatccgtcgggacctgggcatttttcggcttgcatggagaacattg |
107 |
Q |
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|||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34671097 |
cgaaaaatatccgggctgcacagttgccaaaaatgttggtaaaaaccaggattaaatccgtcaggacctgggcatttttcggcttgcattgagaacattg |
34670998 |
T |
|
| Q |
108 |
cctccttaaattcttctatcaaaaaaggtgttgtaagttgatgattatcctcctcggaaatgactttatttataacattaatcaccggatctcttgtgct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34670997 |
cctccttaaattcttctatcaaaaaaggtgttgtaagttgatgattatcctcctcggaaatgactttatttataacattgatcaccggatctcttgtgct |
34670898 |
T |
|
| Q |
208 |
ttgtttagctcgaaacagctcatcaaagtaacatttagctaccgaagccataccattatcatctgacacacggacccctccatcatcttcaagagaaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
34670897 |
ttgtttagctcgaaacagctcatcaaagtaacatttagctactgaagccatatcattatcatctgacacacggacccctgcatcatcttctagagaaaga |
34670798 |
T |
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| Q |
308 |
attttatttacctttttccttgatgtagctcaatcgtggaagaacttggtgttaagatctccttccttgtaccaatga |
385 |
Q |
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| T |
34670797 |
attttatttacctttttccttgctgtagctgaagcgtggaagaacttggtgttaagatctccttccttgtactaatga |
34670720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27054948 - 27055001
Alignment:
| Q |
13 |
aatatctgggctgcacagttgcaaaaaatgttggtaaaaaccaggattaaatcc |
66 |
Q |
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| T |
27054948 |
aatatccgggctgcaaacttcccaaaaatgttggtaaaaacctggattaaatcc |
27055001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 34932545 - 34932439
Alignment:
| Q |
53 |
ccaggattaaatccgtcgggacctgggcatttttcggcttgcatggagaacattgcctccttaaattcttctatcaaaaaaggtgttgtaagttgatgat |
152 |
Q |
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|||||||| ||||| || |||||||| ||||| || | ||||||||| |||||||| || |||||||||||||| |||| || ||||| |||||| || |
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| T |
34932545 |
ccaggattgaatccatcaggacctggacatttgtcaggttgcatggaaaacattgcttctttaaattcttctatgcaaaagggagttgttagttgagcat |
34932446 |
T |
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| Q |
153 |
tatcctc |
159 |
Q |
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||||||| |
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| T |
34932445 |
tatcctc |
34932439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 25597475 - 25597563
Alignment:
| Q |
36 |
aaaaatgttggtaaaaaccaggattaaatccgtcgggacctgggcatttttcggcttgcatggagaacattgcctccttaaattcttct |
124 |
Q |
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| T |
25597475 |
aaaaatgttggtaaaaccccggattaaaaccatcagggccagggcatttatcaggttgcatagagaacattgcttctttaaactcttct |
25597563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 3965007 - 3965073
Alignment:
| Q |
36 |
aaaaatgttggtaaaaaccaggattaaatccgtcgggacctgggcatttttcggcttgcatggagaa |
102 |
Q |
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|||||||||| || ||||| |||||||| || || |||||||| ||||| || |||||||||||||| |
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| T |
3965007 |
aaaaatgttgatagaaacctggattaaaaccatctggacctggacatttatctgcttgcatggagaa |
3965073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 26431906 - 26431972
Alignment:
| Q |
36 |
aaaaatgttggtaaaaaccaggattaaatccgtcgggacctgggcatttttcggcttgcatggagaa |
102 |
Q |
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|||||||||| || ||||| |||||||| || || |||||||| ||||| || |||||||||||||| |
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| T |
26431906 |
aaaaatgttgatagaaacctggattaaaaccatctggacctggacatttatctgcttgcatggagaa |
26431972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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