View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_45 (Length: 372)

Name: NF18317_high_45
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_45
NF18317_high_45
[»] chr1 (6 HSPs)
chr1 (9-189)||(25590275-25590455)
chr1 (276-356)||(25590468-25590548)
chr1 (9-126)||(44540811-44540928)
chr1 (9-126)||(50780708-50780825)
chr1 (301-346)||(44541029-44541074)
chr1 (276-347)||(50780901-50780972)
[»] chr4 (9 HSPs)
chr4 (9-127)||(25170765-25170883)
chr4 (9-126)||(5725294-5725411)
chr4 (9-107)||(6681151-6681249)
chr4 (194-277)||(18149910-18149993)
chr4 (9-126)||(50912491-50912609)
chr4 (276-349)||(50912342-50912415)
chr4 (280-356)||(26903884-26903960)
chr4 (277-347)||(5725486-5725556)
chr4 (276-349)||(6681344-6681417)
[»] chr7 (8 HSPs)
chr7 (9-126)||(293740-293857)
chr7 (9-126)||(35894827-35894944)
chr7 (9-126)||(43087684-43087801)
chr7 (42-126)||(8266434-8266518)
chr7 (276-349)||(293591-293664)
chr7 (275-345)||(45938247-45938317)
chr7 (276-346)||(35894681-35894751)
chr7 (305-347)||(43087537-43087579)
[»] chr3 (7 HSPs)
chr3 (9-126)||(18649064-18649181)
chr3 (194-277)||(28374398-28374481)
chr3 (194-277)||(28382220-28382303)
chr3 (9-126)||(11748269-11748386)
chr3 (276-347)||(11748462-11748533)
chr3 (83-126)||(32371904-32371947)
chr3 (277-347)||(18649256-18649326)
[»] chr2 (5 HSPs)
chr2 (9-126)||(296307-296424)
chr2 (9-126)||(29960903-29961020)
chr2 (194-277)||(33876739-33876822)
chr2 (276-346)||(29960761-29960831)
chr2 (276-346)||(296161-296231)
[»] chr8 (7 HSPs)
chr8 (24-136)||(25480378-25480490)
chr8 (9-126)||(37186241-37186358)
chr8 (194-277)||(5582303-5582386)
chr8 (9-126)||(37790563-37790677)
chr8 (300-356)||(25480261-25480317)
chr8 (276-347)||(37186434-37186505)
chr8 (276-346)||(37790753-37790823)
[»] scaffold0019 (1 HSPs)
scaffold0019 (276-356)||(59135-59215)
[»] scaffold0336 (1 HSPs)
scaffold0336 (9-126)||(41-159)
[»] chr5 (2 HSPs)
chr5 (26-136)||(22664268-22664378)
chr5 (276-356)||(22664444-22664524)
[»] chr6 (1 HSPs)
chr6 (276-356)||(11186469-11186549)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 25590275 - 25590455
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25590275 gataattctctagcatatcccaagtttctttggatcttgttgcttgtgaaatcttcttaaaatgttgattattaacattttgttgaatgtaaaacagtgc 25590374  T
Q  109 cttacaatctttcttctttgcttctttgaaggtcaatctttgtgcttcaattggatttacccccaaattttgatagccatt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25590375 cttacaatctttcttctttgcttctttgaaggtcaatctttgtgcttcaattggatttacccccaaattttcatagccatt 25590455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 25590468 - 25590548
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590468 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 25590548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 44540811 - 44540928
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || |||||||| | |||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||| ||||  ||    
T  44540811 gataattctccagaatatcccatgcttctttggatcttgttgcttttgaaatcttatcaaaatgttgattatcaacattttgttgaatgtagaacaaagc 44540910  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  44540911 tttacaatctttcttctt 44540928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 50780708 - 50780825
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || ||||| || | ||||||||||||  |||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||  ||    
T  50780708 gataattctccagaatatctcatgcttctttggatctatttgcttttgaaatcttctcaaaatgttgattatcaacattttgttgaatgtagaacatagc 50780807  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  50780808 tttacaatctttcttctt 50780825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 44541029 - 44541074
Alignment:
Q  301 gatctcatcaaggcactccatcgttcccagttcttgtcatcaagaa 346  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  44541029 gatctcatcaaagcactccatcgttcccagttcttgccatcaagaa 44541074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 50780901 - 50780972
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaac 347  Q
    ||||||||||||  | ||||| |  ||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  50780901 actcacatcttgcgcgccaaacaatgatctcatcaaagcactccattgttcccagttcttgccatcaagaac 50780972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 25170883 - 25170765
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||| || |||    
T  25170883 gataattctccagtatatcccaagcttctttggatcttgttgcctttgaaatcttctcaaaattttgattatcaacattatgttgaatgtaaatcaatgc 25170784  T
Q  109 cttacaatctttcttcttt 127  Q
    ||| |||||||||||||||    
T  25170783 cttgcaatctttcttcttt 25170765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5725294 - 5725411
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || |||||||| | |||||||||||| ||||| | |||||||||||||||||||||||||| || ||||||||||||||| ||||| ||    
T  5725294 gataattctccagaatatcccatgcttctttggatctagttgcttttgaaatcttctcaaaatgttgattatcaatattttgttgaatgtagaacagagc 5725393  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  5725394 tttacaatctttcttctt 5725411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 6681151 - 6681249
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtg 107  Q
    |||||||||| ||||||||||| | ||| |||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  6681151 gataattctccagtatatcccatgcttccttggatcttgttgcttttgaaatattctcaaaatgttgattatcaacattttgttgaatgtaaaacagtg 6681249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 277
Target Start/End: Complemental strand, 18149993 - 18149910
Alignment:
Q  194 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattagaac 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  18149993 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattagaac 18149910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 50912609 - 50912491
Alignment:
Q  9 gataattctctagtatatcccaag-tttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtg 107  Q
    |||||||||| || |||||||| | |||||||||||| ||| ||||  || |||||||||||||| ||||||| |||||||||||||||||| || || |    
T  50912609 gataattctccagaatatcccatgctttctttggatcctgtcgccttggatatcttctcaaaatgctgattatcaacattttgttgaatgtagaaaagag 50912510  T
Q  108 ccttacaatctttcttctt 126  Q
    | || ||||||||||||||    
T  50912509 ctttgcaatctttcttctt 50912491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 50912415 - 50912342
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaacca 349  Q
    ||||||||||||| | ||||| | |||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  50912415 actcacatcttgtgcgccaaacaaagatctcatcaaagctctccatcgttcccagttcttgccatcaagaacca 50912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 26903960 - 26903884
Alignment:
Q  280 acatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 356  Q
    ||||||||| | ||||| | | |||||||||||||||| ||||||||||| |||||  ||| |||||||| ||||||    
T  26903960 acatcttgtgcgccaaacaaatatctcatcaaggcactacatcgttcccatttcttaacattaagaaccaaaatgtt 26903884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 5725486 - 5725556
Alignment:
Q  277 ctcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaac 347  Q
    |||||||||||  | ||||| |  ||||||||||| || |||||||| |||||||||||| ||||||||||    
T  5725486 ctcacatcttgcgcgccaaacaacgatctcatcaaagcgctccatcgctcccagttcttgccatcaagaac 5725556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 6681344 - 6681417
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaacca 349  Q
    ||||||||||||  | ||||| |  |||||||||||  || |||||||||| ||||||||| ||||||||||||    
T  6681344 actcacatcttgcgcgccaaacaatgatctcatcaaaacagtccatcgttctcagttcttgccatcaagaacca 6681417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 293857 - 293740
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    ||||||||||||| ||||| || | ||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| || ||    
T  293857 gataattctctagaatatctcatgcttccttggatcttgttgcttttgaaatcttctcaaaatgttgattatcaacattttgttgaatgtaaaagagagc 293758  T
Q  109 cttacaatctttcttctt 126  Q
     ||| |||||||||||||    
T  293757 tttataatctttcttctt 293740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 35894944 - 35894827
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || ||||| || | |||||||||||| || || | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  35894944 gataattctccagaatatctcatgcttctttggatctagtggcttttgaaatcttctcaaaatgttgattatcaacattttgttgaatgtagaacagagc 35894845  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  35894844 tttacaatctttcttctt 35894827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 43087801 - 43087684
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| |  |||||||| | |||||| ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||| || ||||| ||    
T  43087801 gataattctccaaaatatcccatgcttctttagatctagttgcttttgaaatcttctcaaaatgttgattatcaacattttgttgaatatagaacagagc 43087702  T
Q  109 cttacaatctttcttctt 126  Q
     ||||| | |||||||||    
T  43087701 tttacagtttttcttctt 43087684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 8266518 - 8266434
Alignment:
Q  42 atcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgccttacaatctttcttctt 126  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||| ||||| || ||| ||||||||||||||    
T  8266518 atcttgttgcctttgaaatcttctcaaaatgttaattatcaacattttgctgaatgttaaacaatgtcttgcaatctttcttctt 8266434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 293664 - 293591
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaacca 349  Q
    ||||||||||||  | ||||| |  ||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  293664 actcacatcttgcgcgccaaacaatgatctcatcaaagcactccatcgatcccagttcttgccatcaagaacca 293591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 45938317 - 45938247
Alignment:
Q  275 aactcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaaga 345  Q
    |||||||||||||  | ||||| |  ||||||||||| || ||||||||||||||||||||| ||||||||    
T  45938317 aactcacatcttgcgcgccaaacaacgatctcatcaaagcgctccatcgttcccagttcttgccatcaaga 45938247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 35894751 - 35894681
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaa 346  Q
    ||||||||||||  | ||||| |  |||||||||||  |||||||||||||||| |||||| |||||||||    
T  35894751 actcacatcttgcgcaccaaacaatgatctcatcaaatcactccatcgttcccaattcttgccatcaagaa 35894681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 43087579 - 43087537
Alignment:
Q  305 tcatcaaggcactccatcgttcccagttcttgtcatcaagaac 347  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||    
T  43087579 tcatcaaagcactccatcgttcccaattcttgccatcaagaac 43087537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 18649064 - 18649181
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || |||||||| | |||||||||||| ||||| | |||||||||||||||||||||||||| || ||||||||||||||| ||||| ||    
T  18649064 gataattctccagaatatcccatgcttctttggatctagttgcttttgaaatcttctcaaaatgttgattatcaatattttgttgaatgtagaacagagc 18649163  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  18649164 tttacaatctttcttctt 18649181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 28374398 - 28374481
Alignment:
Q  194 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattagaac 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  28374398 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattagaac 28374481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 28382220 - 28382303
Alignment:
Q  194 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattagaac 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  28382220 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattagaac 28382303  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 11748269 - 11748386
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| |  |||||||| | ||||||| |||| ||||| | ||||||||||||||||| |||||||| ||||||||||||||| || ||||| ||    
T  11748269 gataattctccaaaatatcccatgcttctttgaatctagttgcttttgaaatcttctcaaaatattgattatcaacattttgttgaatatagaacagagc 11748368  T
Q  109 cttacaatctttcttctt 126  Q
     ||||||||||| |||||    
T  11748369 tttacaatctttattctt 11748386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 11748462 - 11748533
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaac 347  Q
    ||||||||||||  | ||||| |  ||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  11748462 actcacatcttgcgcgccaaacaatgatctcatcaaagcactccatcgttctcagttcttgccatcaagaac 11748533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 32371904 - 32371947
Alignment:
Q  83 acattttgttgaatgtaaaacagtgccttacaatctttcttctt 126  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||    
T  32371904 acattttgttgaatgtagaacaatgccttgcaatctttcttctt 32371947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 18649256 - 18649326
Alignment:
Q  277 ctcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaac 347  Q
    |||||||||||  | ||||| |  ||||||||||| || |||||||| |||||||||||| ||||||||||    
T  18649256 ctcacatcttgcgcgccaaacaacgatctcatcaaagcgctccatcgctcccagttcttgccatcaagaac 18649326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 296424 - 296307
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || |||||||| | |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||| | ||    
T  296424 gataattctccagaatatcccatgcttctttggatctagttgcttttgaaatcttctcaaaatgttgattatcaacattttgttgaatgtagaactgagc 296325  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  296324 tttacaatctttcttctt 296307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 29961020 - 29960903
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || |||||||| | |||||||||||| ||||  | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  29961020 gataattctccagaatatcccatgcttctttggatctagttgattttgaaatcttctcaaaatgttgattatcaacattttgttgaatgtagaacagagc 29960921  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  29960920 tttacaatctttcttctt 29960903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 33876739 - 33876822
Alignment:
Q  194 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattagaac 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||| |||||||||||||||||||    
T  33876739 ttttggtacctattatgaaatttatgggcaatatttagtaataagaagtataaaaaaaaaaatttgttgtatatacattagaac 33876822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 29960831 - 29960761
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaa 346  Q
    ||||||||||||  | ||||| |  ||||||||||| || ||||||||||||||||||||| |||||||||    
T  29960831 actcacatcttgcgcgccaaacaatgatctcatcaaagcgctccatcgttcccagttcttgccatcaagaa 29960761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 296231 - 296161
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaa 346  Q
    ||||||||||||  | ||||| |  ||||||||||| ||||||||| ||||| |||||||| |||||||||    
T  296231 actcacatcttgcacgccaaacaatgatctcatcaaagcactccattgttcctagttcttgccatcaagaa 296161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 25480490 - 25480378
Alignment:
Q  24 tatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgccttacaatctttctt 123  Q
    ||||||||| |||||| ||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||||| || ||| | ||||||||    
T  25480490 tatcccaagcttctttagatcttgttgcctttgatatcttcacaaaatgttgattatcaacattttgttgaatgtaaaacagagctttatagtctttctt 25480391  T
Q  124 ctttgcttctttg 136  Q
    ||||| |||||||    
T  25480390 ctttgattctttg 25480378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 37186241 - 37186358
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||  || ||||| || | |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  37186241 gataattcttcagaatatctcatgcttctttggatctagttgcttttgaaatcttctcaaaatgttgattatcaacattttgttgaatgtagaacagagc 37186340  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  37186341 tttacaatctttcttctt 37186358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 5582303 - 5582386
Alignment:
Q  194 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattagaac 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  5582303 ttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattagaac 5582386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 37790563 - 37790677
Alignment:
Q  9 gataattctctagtatatcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgc 108  Q
    |||||||||| || |||||||| | |||||| ||||| ||||| | ||||||||||||||||||   ||||| || ||||||||||||||| ||||| ||    
T  37790563 gataattctccagaatatcccatgcttctttagatctagttgcttttgaaatcttctcaaaatg---attatcaatattttgttgaatgtagaacagagc 37790659  T
Q  109 cttacaatctttcttctt 126  Q
     |||||||||||||||||    
T  37790660 tttacaatctttcttctt 37790677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 25480317 - 25480261
Alignment:
Q  300 agatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 356  Q
    |||||| |||||||||||| ||||||||||||||||  |||||||||| ||||||||    
T  25480317 agatctgatcaaggcactcaatcgttcccagttctttccatcaagaactagaatgtt 25480261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 37186434 - 37186505
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaac 347  Q
    ||||||||||||  | ||||| |  ||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  37186434 actcacatcttgcgcgccaaacaatgatctcatcaaagcactccatcgttcccagttcttgccatgaagaac 37186505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 37790753 - 37790823
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaa 346  Q
    ||||||||||||  | ||||| |  |||| |||||| ||||||||||||||||| |||||| |||||||||    
T  37790753 actcacatcttgcgcgccaaacaatgatcacatcaaagcactccatcgttcccaattcttgccatcaagaa 37790823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 59135 - 59215
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 356  Q
    ||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  59135 actcacatcttgcgctccaaataaagatctcatcaaagcactccatcgttcccagttcttgtcatcaagaaccaggatgtt 59215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 159 - 41
Alignment:
Q  9 gataattctctagtatatcccaag-tttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtg 107  Q
    |||||||||| || |||||||| | |||||||||||| ||| ||||  || |||||||||||||| ||||||| |||||||||||||||||| || || |    
T  159 gataattctccagaatatcccatgctttctttggatcctgtcgccttggatatcttctcaaaatgctgattatcaacattttgttgaatgtagaaaagag 60  T
Q  108 ccttacaatctttcttctt 126  Q
    | || ||||||||||||||    
T  59 ctttgcaatctttcttctt 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 22664268 - 22664378
Alignment:
Q  26 tcccaagtttctttggatcttgttgcctgtgaaatcttctcaaaatgttgattattaacattttgttgaatgtaaaacagtgccttacaatctttcttct 125  Q
    ||||||| ||||||||||||| |||||| ||| || ||||||||||||||||||| |||||||||| |||||||||| |  |  ||||| ||||| ||||    
T  22664268 tcccaagcttctttggatcttattgcctttgatatattctcaaaatgttgattatcaacattttgtggaatgtaaaatatagttttacagtctttattct 22664367  T
Q  126 ttgcttctttg 136  Q
    ||| |||||||    
T  22664368 ttgattctttg 22664378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 22664444 - 22664524
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 356  Q
    |||||||||||||   ||||| | | ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  22664444 actcacatcttgtgtgccaaacaaatatctcatcaaggcactccatcgttcccagtttttgccatcaagaactagaatgtt 22664524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 11186469 - 11186549
Alignment:
Q  276 actcacatcttgttctccaaatagagatctcatcaaggcactccatcgttcccagttcttgtcatcaagaaccagaatgtt 356  Q
    ||||||||||||| | ||||| |  |||||||||||||||||||||| ||||||||||||| ||| ||||| || ||||||    
T  11186469 actcacatcttgtgcgccaaacaaggatctcatcaaggcactccatcattcccagttcttgccattaagaatcaaaatgtt 11186549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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