View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_49 (Length: 369)
Name: NF18317_high_49
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_49 |
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| [»] scaffold0417 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 27254406 - 27254763
Alignment:
| Q |
1 |
aaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaatattacaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254406 |
aaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaatattacaga |
27254505 |
T |
|
| Q |
101 |
atttgacataacctcagcacattagaatataaataataaaatttctaaactacacaatgaataaatagagtattgggaactcacacgacatctgtgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254506 |
atttgacataacctcagcacattagaatataaataataaaatttctaaactacacaatgaataaatagagtattgggaactcacacgacatctgtgttgt |
27254605 |
T |
|
| Q |
201 |
cctacaaaattaacccaaattatacgaacaaatgaaacattctctaagtcatcgacatcttcaacctcctcaactgcttttctcaactctctcaaatcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27254606 |
cctacaaaattaacccaaattatacgaacaaatgaaacattctctaagtcatcgacatcttcaacctcctcgactgcttttctcaactctctcaaatcca |
27254705 |
T |
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| Q |
301 |
tttcctcaaactatcatcaattccctatgggtttggttagtacgttatatatattgat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254706 |
tttcctcaaactatcatcaattccctatgggtttggttagtacgttatatatattgat |
27254763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 178 - 350
Target Start/End: Original strand, 27294713 - 27294888
Alignment:
| Q |
178 |
aactcacacgacatctgtgttgtcctacaaaattaacccaaattatacgaacaaatgaaacattctctaagtcatcgacatcttcaacctcctcaactgc |
277 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
27294713 |
aactcacacgacatctatgttgtcctaaaaagttaacccaaattatacgaacaaatgaagcattctctaagtcatcgacatcttcaacctcctcaacagc |
27294812 |
T |
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| Q |
278 |
ttttctcaactctctcaaatccatttcctcaaactatcatca---attccctatgggtttggttagtacgttatat |
350 |
Q |
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|||||||||||| |||||||||||||||||||||||| | | ||||| ||||||||||||||||||| ||||| |
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| T |
27294813 |
ttttctcaactcactcaaatccatttcctcaaactatgaataattattccttatgggtttggttagtacggtatat |
27294888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27294529 - 27294647
Alignment:
| Q |
1 |
aaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaatattacaga |
100 |
Q |
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|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27294529 |
aaatagaagtcaatgccatgctcccaaatggtacagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctga---attacaga |
27294625 |
T |
|
| Q |
101 |
atttgacataacctcagcacat |
122 |
Q |
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| ||||||||||||||| |||| |
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| T |
27294626 |
aattgacataacctcagaacat |
27294647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 27425934 - 27425868
Alignment:
| Q |
25 |
caaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
91 |
Q |
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|||||| |||| ||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
27425934 |
caaatgctaaaccaaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaaa |
27425868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 27425764 - 27425702
Alignment:
| Q |
178 |
aactcacacgacatctgtgttgtcctacaaaattaacccaaattatacgaacaaatgaaacat |
240 |
Q |
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||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||| |
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| T |
27425764 |
aactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaacat |
27425702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 12815 - 12901
Alignment:
| Q |
5 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
91 |
Q |
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|||||||| ||||||| || |||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815 |
agaagtcattaccatactcacaaatgctaaaccaacaccattcttagtaacaacatcatagaaacgctttctaggaatagcctgaaa |
12901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 12980 - 13045
Alignment:
| Q |
175 |
gggaactcacacgacatctgtgttgtcctacaaaattaacccaaattatacgaacaaatgaaacat |
240 |
Q |
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||||||||||||||||||||||||||||| | || |||||| | |||||||||||||||||||| |
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| T |
12980 |
gggaactcacacgacatctgtgttgtcctgaattatcaacccataatatacgaacaaatgaaacat |
13045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 13354409 - 13354343
Alignment:
| Q |
25 |
caaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
91 |
Q |
| |
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|||||| |||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
13354409 |
caaatgctaaaccaatcccattcttcttaacaacatcatagaaatgctttctaggaatagcctgaaa |
13354343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 13353895 - 13353832
Alignment:
| Q |
178 |
aactcacacgacatctgtgttgtcctacaaaattaacccaaattatacgaacaaatgaaacatt |
241 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||| |
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| T |
13353895 |
aactcacacgacatctgtgttgtcctgaaatattaacccataatatacgaacaaatgaaacatt |
13353832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 6792368 - 6792298
Alignment:
| Q |
5 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttc |
75 |
Q |
| |
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|||||||| ||||||| || || || |||||||||||||||||| |||||| ||||||| ||| |||||| |
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|
| T |
6792368 |
agaagtcattaccatattctcatctgctaaagcaaccccattctttgtaacatcatcataaaaatgctttc |
6792298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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