View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_5 (Length: 697)

Name: NF18317_high_5
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_5
NF18317_high_5
[»] chr3 (21 HSPs)
chr3 (272-678)||(40368350-40368757)
chr3 (16-200)||(40368829-40369014)
chr3 (466-588)||(8257024-8257146)
chr3 (456-566)||(19814963-19815073)
chr3 (462-572)||(29564995-29565105)
chr3 (281-422)||(19814777-19814918)
chr3 (314-371)||(38282842-38282899)
chr3 (464-577)||(38415649-38415765)
chr3 (314-436)||(29564836-29564955)
chr3 (314-435)||(5135649-5135771)
chr3 (322-370)||(34337963-34338011)
chr3 (330-378)||(38415508-38415556)
chr3 (314-371)||(6269108-6269166)
chr3 (314-371)||(6503253-6503311)
chr3 (314-371)||(19390573-19390631)
chr3 (314-371)||(22968126-22968184)
chr3 (314-371)||(34083802-34083860)
chr3 (314-371)||(39772217-39772275)
chr3 (314-371)||(40081423-40081481)
chr3 (447-488)||(43042313-43042354)
chr3 (314-370)||(35937650-35937705)
[»] chr2 (22 HSPs)
chr2 (281-422)||(21556471-21556612)
chr2 (283-408)||(37621714-37621839)
chr2 (454-585)||(21556297-21556428)
chr2 (480-577)||(18365277-18365374)
chr2 (454-573)||(17373669-17373788)
chr2 (281-371)||(25391406-25391496)
chr2 (504-561)||(18829837-18829894)
chr2 (493-559)||(26591972-26592038)
chr2 (356-436)||(26591830-26591910)
chr2 (447-566)||(18829072-18829191)
chr2 (314-369)||(26591471-26591526)
chr2 (313-371)||(2042760-2042818)
chr2 (314-371)||(6403486-6403544)
chr2 (314-371)||(17444723-17444781)
chr2 (314-371)||(18982016-18982074)
chr2 (314-371)||(31581303-31581361)
chr2 (314-371)||(41251316-41251374)
chr2 (314-371)||(3843997-3844054)
chr2 (327-371)||(8147777-8147822)
chr2 (524-577)||(45121440-45121493)
chr2 (314-350)||(15441868-15441904)
chr2 (313-369)||(18829285-18829341)
[»] chr1 (14 HSPs)
chr1 (318-408)||(5715505-5715595)
chr1 (314-403)||(7350314-7350403)
chr1 (312-371)||(18716428-18716487)
chr1 (132-186)||(6707062-6707116)
chr1 (447-588)||(33489900-33490044)
chr1 (515-588)||(3829177-3829250)
chr1 (314-371)||(9901675-9901732)
chr1 (315-431)||(24663185-24663302)
chr1 (314-422)||(41971941-41972050)
chr1 (330-371)||(43894390-43894431)
chr1 (314-371)||(17445719-17445777)
chr1 (314-371)||(32981739-32981797)
chr1 (283-371)||(33490131-33490220)
chr1 (331-367)||(17744547-17744583)
[»] scaffold0134 (1 HSPs)
scaffold0134 (314-435)||(17670-17791)
[»] chr6 (12 HSPs)
chr6 (314-408)||(21556444-21556538)
chr6 (359-435)||(23217378-23217453)
chr6 (311-367)||(31373364-31373420)
chr6 (314-371)||(4335206-4335263)
chr6 (313-382)||(10231716-10231785)
chr6 (313-402)||(22814766-22814855)
chr6 (314-399)||(28931407-28931492)
chr6 (314-381)||(12850064-12850131)
chr6 (314-371)||(399044-399102)
chr6 (309-350)||(9491313-9491354)
chr6 (356-420)||(9490999-9491063)
chr6 (329-435)||(29743644-29743752)
[»] chr4 (33 HSPs)
chr4 (314-408)||(31853616-31853710)
chr4 (447-548)||(20635544-20635645)
chr4 (281-369)||(29094576-29094664)
chr4 (459-561)||(20628695-20628797)
chr4 (281-369)||(4038355-4038443)
chr4 (327-371)||(16877622-16877666)
chr4 (329-435)||(1818078-1818185)
chr4 (478-573)||(3222233-3222328)
chr4 (494-561)||(9614840-9614907)
chr4 (314-371)||(28876998-28877056)
chr4 (314-435)||(48130340-48130461)
chr4 (278-402)||(9415294-9415418)
chr4 (313-396)||(20629209-20629292)
chr4 (454-573)||(26547117-26547235)
chr4 (459-573)||(29094358-29094473)
chr4 (327-369)||(2321229-2321271)
chr4 (314-371)||(6235935-6235993)
chr4 (506-564)||(13501778-13501836)
chr4 (314-371)||(17510915-17510973)
chr4 (314-371)||(20129740-20129798)
chr4 (314-371)||(25931135-25931193)
chr4 (314-371)||(26438961-26439019)
chr4 (314-371)||(34406966-34407024)
chr4 (314-371)||(36382029-36382087)
chr4 (314-371)||(40529442-40529500)
chr4 (314-371)||(43356331-43356389)
chr4 (330-371)||(44157072-44157114)
chr4 (314-371)||(47501200-47501258)
chr4 (314-371)||(18990500-18990557)
chr4 (515-588)||(48130172-48130245)
chr4 (454-566)||(7179596-7179708)
chr4 (536-588)||(18990735-18990787)
chr4 (356-436)||(20635668-20635748)
[»] chr8 (20 HSPs)
chr8 (314-422)||(378799-378907)
chr8 (313-422)||(32540147-32540256)
chr8 (281-403)||(32750317-32750436)
chr8 (321-371)||(33639066-33639116)
chr8 (329-435)||(36408901-36409008)
chr8 (314-371)||(9877645-9877703)
chr8 (515-588)||(3435459-3435532)
chr8 (330-371)||(9175560-9175601)
chr8 (330-366)||(29351793-29351829)
chr8 (512-588)||(32540348-32540424)
chr8 (314-371)||(3648476-3648534)
chr8 (314-371)||(29728064-29728122)
chr8 (313-371)||(32964195-32964253)
chr8 (314-371)||(39914941-39914999)
chr8 (314-371)||(42231362-42231420)
chr8 (504-577)||(9176067-9176140)
chr8 (515-588)||(42231131-42231204)
chr8 (311-347)||(15817799-15817835)
chr8 (475-566)||(15863518-15863610)
chr8 (314-369)||(40470225-40470281)
[»] chr7 (26 HSPs)
chr7 (314-422)||(33386975-33387082)
chr7 (504-563)||(12224864-12224923)
chr7 (281-408)||(23581399-23581526)
chr7 (314-371)||(49010160-49010217)
chr7 (314-402)||(20606020-20606108)
chr7 (454-566)||(44832172-44832284)
chr7 (327-371)||(8725278-8725322)
chr7 (281-369)||(13072511-13072599)
chr7 (314-402)||(20611802-20611890)
chr7 (327-407)||(44832345-44832424)
chr7 (454-562)||(20609135-20609241)
chr7 (314-402)||(20609313-20609401)
chr7 (454-566)||(32073089-32073201)
chr7 (479-566)||(23581230-23581317)
chr7 (314-371)||(3113804-3113862)
chr7 (314-371)||(5555889-5555947)
chr7 (314-371)||(7003150-7003208)
chr7 (314-371)||(7049021-7049079)
chr7 (314-371)||(8394552-8394610)
chr7 (314-371)||(14776789-14776847)
chr7 (311-369)||(23582396-23582454)
chr7 (333-371)||(25709005-25709043)
chr7 (329-379)||(31252488-31252538)
chr7 (314-371)||(36658604-36658662)
chr7 (327-371)||(36631243-36631288)
chr7 (357-436)||(12224298-12224378)
[»] chr5 (16 HSPs)
chr5 (313-369)||(35338295-35338351)
chr5 (314-435)||(38269093-38269215)
chr5 (356-426)||(1050847-1050917)
chr5 (454-561)||(8788056-8788165)
chr5 (330-369)||(8788246-8788285)
chr5 (281-348)||(13489699-13489766)
chr5 (462-577)||(23236700-23236815)
chr5 (314-371)||(192332-192390)
chr5 (314-371)||(31501402-31501460)
chr5 (314-371)||(39435123-39435181)
chr5 (327-371)||(1776071-1776116)
chr5 (512-573)||(21548582-21548643)
chr5 (314-371)||(30297636-30297692)
chr5 (314-381)||(11779245-11779310)
chr5 (328-371)||(13818404-13818448)
chr5 (311-351)||(35911411-35911451)
[»] scaffold0015 (1 HSPs)
scaffold0015 (279-370)||(2104-2195)
[»] scaffold0495 (1 HSPs)
scaffold0495 (313-382)||(8436-8505)
[»] scaffold0002 (1 HSPs)
scaffold0002 (314-371)||(480139-480197)
[»] scaffold2142 (1 HSPs)
scaffold2142 (327-371)||(949-994)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 272 - 678
Target Start/End: Complemental strand, 40368757 - 40368350
Alignment:
Q  272 gtaccatcgccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40368757 gtaccatcaccatgaaattttggtgtttgtaaacggcaaatgaattatttatgaattgtttaagaaattcataattatggaaaataaaaattcataatta 40368658  T
Q  372 gtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtcttaaacatgctagnnnnnnnt--tcaacatctagatcactttttt 469  Q
    || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  40368657 gttcgtccctagtcggaaaaatctaattttttgtgtagagcaatattttaatgtcttaaacatgctagaaaaaaaaaatcaacatctagatcactttttt 40368558  T
Q  470 ggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgt 569  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40368557 gaattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaa-acgtgttttttattttacaatgtcatttttcaaacattgt 40368459  T
Q  570 gtatattaaaaggtcaattaactttgaggaagaacaaacttcaaaatcctaggttaaaaccatcaaaccaatccaagtgggtttgattcttcaatagtta 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40368458 gtatattaaaaggtcaattaactttgaggaagaacaaacttcaaagtcctaggttaacaccatcaaaccaatccaagtgggtttgattcttcaatagtta 40368359  T
Q  670 gtagtttta 678  Q
    |||||||||    
T  40368358 gtagtttta 40368350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 40369014 - 40368829
Alignment:
Q  16 atatcaaagagttagatcaccttttatgtagttatatatatcaaagagttttgtacaaatcaacgacaacaaattttgt-tccttacttttgtaggcatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||    
T  40369014 atatcaaagagttagatcaccttttatgtagttatatatatcaaagagttttgtacaaatcaatgacaacaaattttgcctccttaattttgtaggcatg 40368915  T
Q  115 gttcttttatcccccattctcttgttctattcatacctaattttgtattttccttttattaacagggaatgttgttttctataacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  40368914 gttcttttatcccccattctcttgttctattcatacctaattttgcatttcccttttattaacagggaatgttgttttctataacc 40368829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 466 - 588
Target Start/End: Complemental strand, 8257146 - 8257024
Alignment:
Q  466 ttttggattatgcgtatattataggataaaaaatgatga-gaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaac 564  Q
    ||||||| | || ||||||| |||| |||||||| |||| |||| | ||||||||| | |||||||  |||||||||||||||| |||||||||||||||    
T  8257146 ttttggactgtgtgtatattgtagggtaaaaaat-atgatgaatatcaaattacaaggctagaatatatgttttttattttacattgtcatttttcaaac 8257048  T
Q  565 attgtgtatattaaaaggtcaatt 588  Q
    || |||||||||| ||||| ||||    
T  8257047 atagtgtatattacaaggttaatt 8257024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 566
Target Start/End: Original strand, 19814963 - 19815073
Alignment:
Q  456 tagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcat 555  Q
    |||||||||||||||||  | || ||||||||||| | |||||| |  ||||||| ||||||||  ||||||||| ||| |||||| ||||||| |||||    
T  19814963 tagatcacttttttggacgacgcatatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaatttacaaggtcat 19815062  T
Q  556 ttttcaaacat 566  Q
    |||||||||||    
T  19815063 ttttcaaacat 19815073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 572
Target Start/End: Original strand, 29564995 - 29565105
Alignment:
Q  462 acttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttca 561  Q
    |||||||| || || || ||||||||||| |||||||| |  ||||| | ||||||||| | || ||||  ||||||||||||||||| |||||||||||    
T  29564995 acttttttcgactacgcttatattatagggtaaaaaataagaagaatatcaaattacaaggctataatatatgttttttattttacaaggtcatttttca 29565094  T
Q  562 aacattgtgta 572  Q
    ||||| |||||    
T  29565095 aacatagtgta 29565105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 281 - 422
Target Start/End: Original strand, 19814777 - 19814918
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccc 380  Q
    |||||||||||||  |||| ||||||  | | |||| | |||||| || |||||||||| |||||||||||  |||||||||||||||| | ||| | |     
T  19814777 ccatgaaattttgaagtttttaaacgagatacgaatcaattatgaattttttaagaaatacataattatgggcaataaaaattcataataaatccataca 19814876  T
Q  381 taatccgaaaaatctaattttttgtgtagagcaatattttaa 422  Q
     | |||||||||||||||||||||| || ||| || ||||||    
T  19814877 cagtccgaaaaatctaattttttgtttaaagccatgttttaa 19814918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 38282899 - 38282842
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  38282899 aattaattataaattgtttaagaaattcataattatgggaaataaaaattcataatta 38282842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 38415649 - 38415765
Alignment:
Q  464 ttttttggattatgcgtatattataggataaaaaatgatga-gaatcttaaattacaaagttagaatacgtgtttt--ttattttacaatgtcatttttc 560  Q
    ||||||||| || |||||||||||||| |||||||  | || |||||| ||||||||  |||| |||| |||||||  ||||||||||||||||||||||    
T  38415649 ttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttc 38415748  T
Q  561 aaacattgtgtatatta 577  Q
    | ||||  |||||||||    
T  38415749 agacatcatgtatatta 38415765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 314 - 436
Target Start/End: Original strand, 29564836 - 29564955
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagca 413  Q
    ||||| |||| | |||||||||||||||||||| ||| | |||||||||||||||||| |  |||| || ||  ||||||||||||||||||||| | |     
T  29564836 aattaattataaattgtttaagaaattcataatcatg-agaataaaaattcataattaat--gtccttagtcgaaaaaatctaattttttgtgtaaaact 29564932  T
Q  414 atattttaatgtcttaaacatgc 436  Q
     |||||||| ||| |||||||||    
T  29564933 gtattttaacgtcctaaacatgc 29564955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 435
Target Start/End: Complemental strand, 5135771 - 5135649
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatgga-aaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagc 412  Q
    ||||| |||| | |||||||||||||||||||||||| |  |||||||||||||||||| |   |||||| ||  | |||| |||||||||||||| |||    
T  5135771 aattaattataaattgtttaagaaattcataattatgaaggaataaaaattcataattaatttatccctagtcgaagaaatttaattttttgtgtaaagc 5135672  T
Q  413 aatattttaatgtcttaaacatg 435  Q
     || |||||| ||  ||||||||    
T  5135671 tattttttaacgtgctaaacatg 5135649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 34338011 - 34337963
Alignment:
Q  322 atgacttgtttaagaaattcataattatggaaaataaaaattcataatt 370  Q
    |||| ||||||||||||||||||||||| | ||| ||||||||||||||    
T  34338011 atgaattgtttaagaaattcataattattggaaacaaaaattcataatt 34337963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 38415508 - 38415556
Alignment:
Q  330 tttaagaaattcataattatggaaaataaaaattcataattagtccgtc 378  Q
    ||||| |||||||| |||||||||||||||||||| |||||| ||||||    
T  38415508 tttaacaaattcatgattatggaaaataaaaattcgtaattaatccgtc 38415556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 6269108 - 6269166
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  6269108 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 6269166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 6503253 - 6503311
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| || ||| ||||||||||||||    
T  6503253 aattaattataaattgtttaagaaattcataattatgagagaatgaaaattcataatta 6503311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 19390631 - 19390573
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  19390631 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 19390573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 22968126 - 22968184
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  22968126 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 22968184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 34083802 - 34083860
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  34083802 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 34083860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 39772275 - 39772217
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  39772275 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 39772217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 40081423 - 40081481
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  40081423 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 40081481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 43042313 - 43042354
Alignment:
Q  447 ttcaacatctagatcacttttttggattatgcgtatattata 488  Q
    ||||| || ||||||||||||||||| |||||||||||||||    
T  43042313 ttcaagatgtagatcacttttttggactatgcgtatattata 43042354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 35937705 - 35937650
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatt 370  Q
    ||||| |||||| |||||||||||| ||||||| ||||  |||||||||||||||||    
T  35937705 aattaattatgaattgtttaagaaactcataataatgg-gaataaaaattcataatt 35937650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 281 - 422
Target Start/End: Complemental strand, 21556612 - 21556471
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccc 380  Q
    |||||||||||||| |||| ||||||  | |  ||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| | | ||||||    
T  21556612 ccatgaaattttggagtttttaaacgagatacaaattaattatgaattgtttaagaaattcataattatgtgaaataaaaattcataataatttcgtccc 21556513  T
Q  381 taatccgaaaaatctaattttttgtgtagagcaatattttaa 422  Q
    || || |||||||||||||||||||||| ||| || ||||||    
T  21556512 tagtcggaaaaatctaattttttgtgtaaagccatgttttaa 21556471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 408
Target Start/End: Original strand, 37621714 - 37621839
Alignment:
Q  283 atgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtcccta 382  Q
    |||||||||||  |||| ||||||  | | |||||| |||||| || ||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  37621714 atgaaattttgaagtttttaaacgagatacgaattaattatgaattatttaagaaattcataattatggggaataaaaattcataattaatccgtcccta 37621813  T
Q  383 atccgaaaaatctaattttttgtgta 408  Q
     || ||||||||| ||||||||||||    
T  37621814 gtcggaaaaatctgattttttgtgta 37621839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 585
Target Start/End: Complemental strand, 21556428 - 21556297
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||||||| ||||||| ||  | | |||||||||||| | |||||| |  ||||||| |||||||| ||||| |||| || | ||||||||||||| |||    
T  21556428 tctagatctctttttttgacaacgggtatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtc 21556329  T
Q  554 atttttcaaacattgtgtatattaaaaggtca 585  Q
    |||||||| |||| |||||| ||||| |||||    
T  21556328 atttttcagacatcgtgtattttaaatggtca 21556297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 577
Target Start/End: Original strand, 18365277 - 18365374
Alignment:
Q  480 tatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatatta 577  Q
    ||||||||| | |||||||| |   ||||||||||||||| || ||||||| |||||||||||||||||   |||||||||||| |||| ||||||||    
T  18365277 tatattataaggtaaaaaataaaatgaatcttaaattacagagctagaatatgtgttttttattttacataatcatttttcaaagattgcgtatatta 18365374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 573
Target Start/End: Original strand, 17373669 - 17373788
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||||||||||||||||||    |||||||||||| | | ||||||    ||||||| |||||||| ||||||||||  | ||||||||||||||  |||    
T  17373669 tctagatcacttttttggacctcgcgtatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtc 17373768  T
Q  554 atttttcaaacattgtgtat 573  Q
    |||||||| |||||| ||||    
T  17373769 atttttcagacattgggtat 17373788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 371
Target Start/End: Complemental strand, 25391496 - 25391406
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||| ||||||||| |||| |||| |  |||| | ||| |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  25391496 ccataaaattttggagtttttaaaggagaaataagttaattatgaattgtttaaaaaatttataattatggagaataaaaattcataatta 25391406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 561
Target Start/End: Original strand, 18829837 - 18829894
Alignment:
Q  504 agaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttca 561  Q
    ||||||| ||||||||  ||||||||| ||| ||||||||||||||||||||||||||    
T  18829837 agaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttca 18829894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 559
Target Start/End: Original strand, 26591972 - 26592038
Alignment:
Q  493 aaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcattttt 559  Q
    |||||||||| ||||||| |||||||| ||| |||||| ||| |||||||||||||  |||||||||    
T  26591972 aaaaaatgataagaatctcaaattacagagtaagaatatgtgatttttattttacatagtcattttt 26592038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 436
Target Start/End: Original strand, 26591830 - 26591910
Alignment:
Q  356 taaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtcttaaacatgc 436  Q
    |||||||||||||||| | ||||| || |   |||| | |||||||||||||||||  ||||||||||||| |||||||||    
T  26591830 taaaaattcataattaattcgtccttagttgaaaaattataattttttgtgtagagtcatattttaatgtcctaaacatgc 26591910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 566
Target Start/End: Complemental strand, 18829191 - 18829072
Alignment:
Q  447 ttcaacatctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttatttta 546  Q
    |||||| |||| |||||||||||| |  | | | |||||||||| | |||||| || ||||||| ||||||  | ||||||||| || ||||||||||||    
T  18829191 ttcaacctctaaatcacttttttgaaccacgtgaatattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttatttta 18829092  T
Q  547 caatgtcatttttcaaacat 566  Q
    ||   |||||||||| ||||    
T  18829091 caggatcatttttcagacat 18829072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 26591526 - 26591471
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    ||||| |||||| ||||||||||||||||||  ||||  |||||||||||||||||    
T  26591526 aattaattatgaattgtttaagaaattcatagctatgagaaataaaaattcataat 26591471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 2042760 - 2042818
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||||| |||||| |||||||| ||||| | |||||||| |||| ||||||||||||||    
T  2042760 gaattaattatgaattgtttaaaaaatttacaattatgggaaatgaaaattcataatta 2042818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 6403486 - 6403544
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  6403486 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 6403544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 17444723 - 17444781
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  17444723 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 17444781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 18982074 - 18982016
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  18982074 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 18982016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 31581303 - 31581361
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  31581303 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 31581361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 41251316 - 41251374
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  41251316 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 41251374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 3843997 - 3844054
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| || ||| ||||||||  ||||||||||||||| ||| |||||||||||||||    
T  3843997 aattaattgtgaattgtttaaataattcataattatggcaaacaaaaattcataatta 3844054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 8147822 - 8147777
Alignment:
Q  327 ttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||    
T  8147822 ttgtttaagaaattcataattatgaggaaatgaaaattcataatta 8147777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 577
Target Start/End: Complemental strand, 45121493 - 45121440
Alignment:
Q  524 tagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatatta 577  Q
    |||||||  |||||| |||||||||||||||||||||| || | ||||||||||    
T  45121493 tagaatatatgttttgtattttacaatgtcatttttcagacgtagtgtatatta 45121440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 15441868 - 15441904
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg 350  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  15441868 aattaattatgaattgtttaagaaattcataattatg 15441904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 18829341 - 18829285
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    |||||| |||||| |||||||||||||||||||  | | | ||||||||||||||||    
T  18829341 gaattaattatgaattgtttaagaaattcataaccacgaagaataaaaattcataat 18829285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 5715505 - 5715595
Alignment:
Q  318 atttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgta 408  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| | |  ||||||| || ||||||||| ||| ||||||||    
T  5715505 atttatgaattgtttaagaaattcataattatggagaataaaaattcataataaatttgtccctagtcggaaaaatctcattgtttgtgta 5715595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 7350314 - 7350403
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaatttttt 403  Q
    ||||| |||||| |||||||| ||| |||||||||||| ||| ||||||||||||||| ||  ||| || || ||||| |||||||||||    
T  7350314 aattaattatgaattgtttaataaaatcataattatgggaaacaaaaattcataattaatcattccttagtcggaaaattctaatttttt 7350403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 18716428 - 18716487
Alignment:
Q  312 tgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||||| |||||| ||||||||||||||||||||| |||  ||| ||||||||||||||    
T  18716428 tgaattaattatgaattgtttaagaaattcataattttggggaatgaaaattcataatta 18716487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 6707116 - 6707062
Alignment:
Q  132 tctcttgttctattcatacctaattttgtattttccttttattaacagggaatgt 186  Q
    ||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||    
T  6707116 tctcttgttctattcatacttaattttgcattttcctatttttaacggggaatgt 6707062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 447 - 588
Target Start/End: Complemental strand, 33490044 - 33489900
Alignment:
Q  447 ttcaacatctagatcacttttttggattatgcgtatattataggata---aaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttatt 543  Q
    |||||||| ||| |||| ||||| || |||||||||||||||||||    |||||| |  ||||  | || |||||| | |||||||  |||||| ||||    
T  33490044 ttcaacatgtaggtcacatttttagactatgcgtatattataggatggtcaaaaataagaagaaattcaagttacaatgctagaatatatgttttgtatt 33489945  T
Q  544 ttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    ||||| |||||||||||| ||||  ||||||||  ||||||||||    
T  33489944 ttacagtgtcatttttcagacatattgtatattgcaaggtcaatt 33489900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 588
Target Start/End: Complemental strand, 3829250 - 3829177
Alignment:
Q  515 ttacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||| ||||  ||||||||| | ||||||||    
T  3829250 ttacaaagttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatt 3829177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 9901675 - 9901732
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||||| || ||||||||||||||||||||||  | ||||||||||||||||    
T  9901675 aattaattatgaattatttaagaaattcataattatggcgattaaaaattcataatta 9901732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 24663185 - 24663302
Alignment:
Q  315 attatttatgacttgtttaagaaa-ttcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagca 413  Q
    |||| |||||| |||||||||||| ||||||||||||||  ||||||||| ||||||| | |||| ||| |  ||||||| |||||| |  |||| |||     
T  24663185 attaattatgaattgtttaagaaaattcataattatggaggataaaaatttataattaattcgtctctagttggaaaaatataatttatcatgtaaagct 24663284  T
Q  414 atattttaatgtcttaaa 431  Q
    ||||||||| ||| ||||    
T  24663285 atattttaacgtcataaa 24663302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 41971941 - 41972050
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagc 412  Q
    ||||| |||| | |||||||||||||||||||||||| |  |||||||||||||||||| |   |||||  ||  | |||| |||||||||||||| |||    
T  41971941 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataattactttatcccttgtcgaagaaatttaattttttgtgtaaagc 41972040  T
Q  413 aatattttaa 422  Q
     |||||||||    
T  41972041 tatattttaa 41972050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 43894431 - 43894390
Alignment:
Q  330 tttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  43894431 tttaacaaattcataattatggagaataaaaattcataatta 43894390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 17445777 - 17445719
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatgga-aaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  17445777 aattaattataaattgtttaagaaattcataattatgaaggaataaaaattcataatta 17445719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 32981739 - 32981797
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| || |||||||||| |||||||    
T  32981739 aattaattataaattgtttaagaaattcataattatgagagaataaaaatttataatta 32981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 371
Target Start/End: Complemental strand, 33490220 - 33490131
Alignment:
Q  283 atgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    |||||||||||  |||| ||||||  | | |||||| |||| | |||||||||||||||||||||||| |  |||||||||| |||||||    
T  33490220 atgaaattttgtagtttttaaacgagatacgaattaattataaattgtttaagaaattcataattatgagggaataaaaattaataatta 33490131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 17744583 - 17744547
Alignment:
Q  331 ttaagaaattcataattatggaaaataaaaattcata 367  Q
    |||||||||||||||||||||  ||||||||||||||    
T  17744583 ttaagaaattcataattatgggtaataaaaattcata 17744547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 314 - 435
Target Start/End: Complemental strand, 17791 - 17670
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagca 413  Q
    ||||| |||| | ||||| |||||||||||| ||||||  |||||||||||||||||| |  ||||||| |   ||||||||||||||||||||| |||     
T  17791 aattacttataaattgttaaagaaattcatacttatggggaataaaaattcataattaatttgtccctagtaaaaaaaatctaattttttgtgtaaagct 17692  T
Q  414 atattttaatgtcttaaacatg 435  Q
    |||||||||| || ||||||||    
T  17691 atattttaatatcctaaacatg 17670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 21556444 - 21556538
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgta 408  Q
    ||||| |||||| || ||||||||||| ||| ||| || ||||||||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  21556444 aattaattatgaattttttaagaaattgatacttacgggaaataaaaattcataattaatccgtccagagtcggaaaaatctaattttttgtgta 21556538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 23217453 - 23217378
Alignment:
Q  359 aaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtcttaaacatg 435  Q
    ||||||||||||| || ||||||  || ||||||| |||||||||||||| ||| ||||||||||||| ||||||||    
T  23217453 aaattcataattaatctgtcccttgtc-gaaaaatataattttttgtgtaaagccatattttaatgtcctaaacatg 23217378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 31373364 - 31373420
Alignment:
Q  311 atgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcata 367  Q
    |||||||| |||||| ||||||||||||||||||||| ||| |||| ||||||||||    
T  31373364 atgaattaattatgaattgtttaagaaattcataattttgggaaattaaaattcata 31373420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 4335206 - 4335263
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||||| ||||||||||||||||||||| | |||||| |||||| |||||||    
T  4335206 aattaattatgaattgtttaagaaattcataattgttgaaaatgaaaattgataatta 4335263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 10231785 - 10231716
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtcccta 382  Q
    |||||| |||| | |||||||||||||||||||||||||  |||||||||| | ||| | ||||||||||    
T  10231785 gaattaattattaattgtttaagaaattcataattatggggaataaaaatttaaaataaatccgtcccta 10231716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 22814766 - 22814855
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttt 402  Q
    |||||| |||||| |||||||||||||||| ||||| ||  ||||||||||||| |||| ||  ||| || ||  |||||||||||||||    
T  22814766 gaattaattatgaattgtttaagaaattcaaaattacggggaataaaaattcattattaatcattccttagtcaaaaaaatctaattttt 22814855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 28931492 - 28931407
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaatt 399  Q
    ||||| |||||| || |||| ||||||||||||||||| ||||||||||| ||||| | |||||| | | |  |||||||||||||    
T  28931492 aattaattatgaattatttacgaaattcataattatgggaaataaaaattaataataaatccgtctcgagttggaaaaatctaatt 28931407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 12850064 - 12850131
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccct 381  Q
    ||||| |||||| |||||||||||||||||||||||||  ||  |||||| ||||||| | |||||||    
T  12850064 aattaattatgaattgtttaagaaattcataattatggggaacgaaaatttataattaattcgtccct 12850131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 399102 - 399044
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  399102 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 399044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 9491354 - 9491313
Alignment:
Q  309 aaatgaattatttatgacttgtttaagaaattcataattatg 350  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  9491354 aaatgaattaattatgaattgtttaagaagttcataattatg 9491313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 9491063 - 9490999
Alignment:
Q  356 taaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatatttt 420  Q
    |||||||||||||||| |||||| || |||  |||| |||||||||||||| | ||| |||||||    
T  9491063 taaaaattcataattaatccgtctcttatcgaaaaattctaattttttgtggaaagccatatttt 9490999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 29743752 - 29743644
Alignment:
Q  329 gtttaagaaattcataattatg-gaaaataaaaattcataattagtccgtccctaatccgaaaaatctaa-ttttttgtgtagagcaatattttaatgtc 426  Q
    |||||||||||||||||||||| |  |||||||||||||||||| |   |||||| ||  | |||| ||| ||||||||||| ||| ||||||||| ||     
T  29743752 gtttaagaaattcataattatgagtgaataaaaattcataattaatttatccctagtcgaagaaatttaatttttttgtgtaaagctatattttaacgtg 29743653  T
Q  427 ttaaacatg 435  Q
     ||||||||    
T  29743652 ctaaacatg 29743644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 31853710 - 31853616
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgta 408  Q
    ||||| |||||| |||||||||||||||||| ||||||  |||||||||||||||| | || |||| ||||  ||||||| ||||||||||||||    
T  31853710 aattaattatgaattgtttaagaaattcatacttatggggaataaaaattcataataaatctgtccataattggaaaaatataattttttgtgta 31853616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 447 - 548
Target Start/End: Complemental strand, 20635645 - 20635544
Alignment:
Q  447 ttcaacatctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttatttta 546  Q
    ||||| ||| |||||||||||||||| |    ||| |||||||| |||||||| |||||||| | ||||||||| |||| |||| |||||||||||||||    
T  20635645 ttcaatatccagatcacttttttggacttaatgtacattatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttatttta 20635546  T
Q  547 ca 548  Q
    ||    
T  20635545 ca 20635544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 29094664 - 29094576
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    |||||||||||||  |||| ||||||  | | |||||| |||||| |||||||||||||||||||||||||  |||| |||||||||||    
T  29094664 ccatgaaattttgaagtttttaaacgagatacgaattaattatgaattgtttaagaaattcataattatggggaatacaaattcataat 29094576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 20628797 - 20628695
Alignment:
Q  459 atcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttt 558  Q
    |||||| ||||||| || | |||||||| ||| |||||||| || ||||| | ||||||||| |||  |||| |||||||||||||||||  ||||||||    
T  20628797 atcactcttttggactaagtgtatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttt 20628698  T
Q  559 tca 561  Q
    |||    
T  20628697 tca 20628695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 4038355 - 4038443
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    |||||||||||||| | || ||||||  | || ||||| |||||| ||| |||||||||||||||||||||  |||||||| |||||||    
T  4038355 ccatgaaattttggaggttttaaacgagatataaattagttatgaattgcttaagaaattcataattatggggaataaaaactcataat 4038443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 16877622 - 16877666
Alignment:
Q  327 ttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  16877622 ttgtttaagaaattcataattatggggaataaaaattcataatta 16877666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 1818185 - 1818078
Alignment:
Q  329 gtttaagaaattcataattatg-gaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtct 427  Q
    |||||||||||||||||||||| |  |||||||||||||||||| |   |||||| ||  | |||| |||||||||||||| ||| ||||||||| ||      
T  1818185 gtttaagaaattcataattatgagggaataaaaattcataattaatttatccctagtcgaagaaatttaattttttgtgtaaagctatattttaacgtgc 1818086  T
Q  428 taaacatg 435  Q
    ||||||||    
T  1818085 taaacatg 1818078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 573
Target Start/End: Original strand, 3222233 - 3222328
Alignment:
Q  478 cgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtat 573  Q
    ||||||||||||| | |||||| |  ||||||| |||| ||| |||||||||| || ||||| ||||||||   | ||||||||||||||||||||    
T  3222233 cgtatattatagggtcaaaaataagaagaatctcaaatgacagagttagaatatgtatttttcattttacaggattatttttcaaacattgtgtat 3222328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 494 - 561
Target Start/End: Original strand, 9614840 - 9614907
Alignment:
Q  494 aaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttca 561  Q
    |||||| || ||||||||||| ||  | ||||||||| ||||||||| ||||||||||||||||||||    
T  9614840 aaaaataataagaatcttaaactattaggttagaatatgtgttttttgttttacaatgtcatttttca 9614907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 28876998 - 28877056
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| | |||||||||||||||||||    
T  28876998 aattaattataaattgtttaagaaattcataattatgaggaaataaaaattcataatta 28877056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 435
Target Start/End: Complemental strand, 48130461 - 48130340
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatgga-aaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagc 412  Q
    ||||| |||| | |||||||||||||||||||||||| |  |||||||||||||||||| |   |||||  ||  | |||| |||||||||||||| |||    
T  48130461 aattaattataaattgtttaagaaattcataattatgaaggaataaaaattcataattattttatccct-gtcgaagaaatttaattttttgtgtaaagc 48130363  T
Q  413 aatattttaatgtcttaaacatg 435  Q
     ||||||||| || |||||||||    
T  48130362 tatattttaacgtattaaacatg 48130340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 402
Target Start/End: Complemental strand, 9415418 - 9415294
Alignment:
Q  278 tcgccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgt 377  Q
    ||||||| ||||||||| |||| ||||||  | |  ||||  |||||| |||||||||||||||||||||||||  | |||||||| ||||| | || ||    
T  9415418 tcgccataaaattttggggtttttaaacgagatacaaatttattatgaattgtttaagaaattcataattatgggtattaaaaattaataataaatctgt 9415319  T
Q  378 ccctaatccgaaaaatctaattttt 402  Q
    ||| | |  ||||||| ||||||||    
T  9415318 cccaagtgggaaaaatataattttt 9415294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 20629209 - 20629292
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatcta 396  Q
    |||||| ||| || ||||||||||||||||||||||| || |||||||| || || ||| | |||||||| |  ||||||||||    
T  20629209 gaattaattaagagttgtttaagaaattcataattatagagaataaaaactcgtacttatttcgtccctagttggaaaaatcta 20629292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 573
Target Start/End: Original strand, 26547117 - 26547235
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||| ||||||||||||||  | |||||||||||||  |||||||| |  ||||| | ||||||||  ||||||| |  | ||||||||||||||   ||    
T  26547117 tctacatcacttttttggaccacgcgtatattatagtgtaaaaaataaaaagaatatcaaattacag-gttagaacatctattttttattttacatgatc 26547215  T
Q  554 atttttcaaacattgtgtat 573  Q
    |||||||||||||| |||||    
T  26547216 atttttcaaacattatgtat 26547235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 573
Target Start/End: Complemental strand, 29094473 - 29094358
Alignment:
Q  459 atcacttttttggattatgcgtatattataggataaaaaatgatgagaa-tcttaaattacaaagttagaatacgtgttttttattttacaatgtcattt 557  Q
    ||||||||||||||  ||||||||| || ||  |||||||| | || || ||| ||||||||  ||||||||| || ||||||||||||||  || ||||    
T  29094473 atcacttttttggaccatgcgtataatagagtgtaaaaaataaagaaaaatctcaaattacagggttagaatatgtattttttattttacagggttattt 29094374  T
Q  558 ttcaaacattgtgtat 573  Q
    |||| |||||| ||||    
T  29094373 ttcagacattgcgtat 29094358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 2321271 - 2321229
Alignment:
Q  327 ttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||    
T  2321271 ttgtttatgaaattcataattatggagaatgaaaattcataat 2321229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 6235993 - 6235935
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatgga-aaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  6235993 aattaattataaattgtttaagaaattcataattatgaaggaataaaaattcataatta 6235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 13501836 - 13501778
Alignment:
Q  506 aatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaac 564  Q
    ||||| ||||||||| |||  |||| |||||||||||||||||| || |||||||||||    
T  13501836 aatctcaaattacaaggttgaaatatgtgttttttattttacaaggtaatttttcaaac 13501778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 17510915 - 17510973
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  17510915 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 17510973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 20129798 - 20129740
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  20129798 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 20129740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 25931193 - 25931135
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  25931193 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 25931135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 26438961 - 26439019
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  26438961 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 26439019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 34406966 - 34407024
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  34406966 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 34407024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 36382029 - 36382087
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  36382029 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 36382087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 40529500 - 40529442
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  40529500 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 40529442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 43356389 - 43356331
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  43356389 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 43356331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 44157114 - 44157072
Alignment:
Q  330 tttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  44157114 tttaagaaattcataattatgagagaataaaaattcataatta 44157072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 47501258 - 47501200
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  47501258 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 47501200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 18990500 - 18990557
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||| | ||| |||||||||||||| ||||||| |||||||||| |||||||    
T  18990500 aattaattataaattgcttaagaaattcatatttatggagaataaaaattaataatta 18990557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 588
Target Start/End: Complemental strand, 48130245 - 48130172
Alignment:
Q  515 ttacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    |||||| |||||||||  |||||| |||||||||  ||||||||||| ||||  ||||||||| | ||||||||    
T  48130245 ttacaatgttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatatggtcaatt 48130172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 7179708 - 7179596
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||||| ||||||||||||  |  |||| |||||| | | |||||| |  ||||| ||||||||||  |||||||||  | ||||||||||||||| ||     
T  7179708 tctagaccacttttttggaccacacgtacattataaggtcaaaaataaaaagaattttaaattacagtgttagaatatctattttttattttacaaggtt 7179609  T
Q  554 atttttcaaacat 566  Q
    |||||||| ||||    
T  7179608 atttttcagacat 7179596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 536 - 588
Target Start/End: Original strand, 18990735 - 18990787
Alignment:
Q  536 tttttattttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    |||||||||||||  |||||||||||||||| || ||||||| ||||| ||||    
T  18990735 tttttattttacagggtcatttttcaaacatagtatatattacaaggttaatt 18990787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 20635748 - 20635668
Alignment:
Q  356 taaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtcttaaacatgc 436  Q
    |||||||||||||||| | |||| ||  ||  |||  |||||||||||||||| | ||||||||||| ||| |||||||||    
T  20635748 taaaaattcataattaattcgtctcttgtcgaaaagttctaattttttgtgtaaaacaatattttaaagtcctaaacatgc 20635668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 378907 - 378799
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagca 413  Q
    ||||| |||| | ||||||||||||||||||||||||   |||||||||||||||||| |  ||||||  ||  |||||| |||||||||||||| |||     
T  378907 aattaattataaattgtttaagaaattcataattatgaggaataaaaattcataattaatttgtccctggtcgaaaaaatttaattttttgtgtaaagct 378808  T
Q  414 atattttaa 422  Q
    |||||||||    
T  378807 atattttaa 378799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 32540147 - 32540256
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagc 412  Q
    |||||| |||| | || ||||||||||| ||||||||||  |||||||||||||||||| |  ||||||| ||  ||||||||| ||||||||||| ||     
T  32540147 gaattaattataaattttttaagaaatttataattatggggaataaaaattcataattaatttgtccctagtcaaaaaaatctatttttttgtgtaaagt 32540246  T
Q  413 aatattttaa 422  Q
     |||||||||    
T  32540247 catattttaa 32540256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 403
Target Start/End: Complemental strand, 32750436 - 32750317
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccc 380  Q
    |||||||||||||| |||| ||||||  | | |||||| |||||| ||||||| ||||||||||| ||||| ||||||||||||||||| | | ||| ||    
T  32750436 ccatgaaattttggagtttttaaacgagatacgaattaattatgaattgtttatgaaattcataa-tatgg-aaataaaaattcataataaattcgt-cc 32750340  T
Q  381 taatccgaaaaatctaatttttt 403  Q
    || || |||||||||| ||||||    
T  32750339 tagtcagaaaaatctattttttt 32750317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 33639116 - 33639066
Alignment:
Q  321 tatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  33639116 tatgaattgtttaagaaatttataattatgggaaataaaaattcataatta 33639066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 36409008 - 36408901
Alignment:
Q  329 gtttaagaaattcataattatg-gaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtct 427  Q
    |||||||||||||||||||||| |  |||||||||||||||||| |   |||||| ||  | |||| |||||||||||||| ||| ||||||||| ||      
T  36409008 gtttaagaaattcataattatgagggaataaaaattcataattaatttatccctagtcgaagaaatttaattttttgtgtaaagctatattttaacgtgc 36408909  T
Q  428 taaacatg 435  Q
    ||||||||    
T  36408908 taaacatg 36408901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 9877703 - 9877645
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||||| |||||||||||||||||||||||| |  ||||||||||||||||||    
T  9877703 aattaattatgaattgtttaagaaattcataattatgagggaataaaaattcataatta 9877645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 588
Target Start/End: Complemental strand, 3435532 - 3435459
Alignment:
Q  515 ttacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    |||||| | ||||||| ||||||| |||||||||  ||||||||||||||||  ||||||||| | ||||||||    
T  3435532 ttacaatgctagaatatgtgttttgtattttacatggtcatttttcaaacataatgtatattatagggtcaatt 3435459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 9175601 - 9175560
Alignment:
Q  330 tttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  9175601 tttaagaaattcataattatgagaaataaaaattcataatta 9175560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 29351829 - 29351793
Alignment:
Q  330 tttaagaaattcataattatggaaaataaaaattcat 366  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29351829 tttaagaaattcataattatggagaataaaaattcat 29351793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 588
Target Start/End: Original strand, 32540348 - 32540424
Alignment:
Q  512 aaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    ||||||||| | || ||||  ||||||||||||||||   |||||||||||||| ||||||||||| | ||||||||    
T  32540348 aaattacaaggctaaaatatatgttttttattttacaggatcatttttcaaacaatgtgtatattagagggtcaatt 32540424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 3648476 - 3648534
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  3648476 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 3648534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 29728064 - 29728122
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  29728064 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 29728122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 32964253 - 32964195
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||||| |||||| || ||||| |||||||||||||||| |||  ||||||||||||||    
T  32964253 gaattaattatgaattatttaaaaaattcataattatggcaaacgaaaattcataatta 32964195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 39914999 - 39914941
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  39914999 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 39914941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 42231420 - 42231362
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  42231420 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 42231362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 577
Target Start/End: Original strand, 9176067 - 9176140
Alignment:
Q  504 agaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatatta 577  Q
    |||||||  ||||||||| ||| |||| ||| |||||||||||    |||||||||||||| ||||||||||||    
T  9176067 agaatctcgaattacaaaattaaaatatgtggtttttattttagtgggtcatttttcaaacgttgtgtatatta 9176140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 588
Target Start/End: Complemental strand, 42231204 - 42231131
Alignment:
Q  515 ttacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtatattaaaaggtcaatt 588  Q
    |||||| | |||||||  |||||| ||||||||| |||||||||||| ||||  ||||||||| | ||||||||    
T  42231204 ttacaatgctagaatatatgttttgtattttacagtgtcatttttcagacataatgtatattacatggtcaatt 42231131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 15817835 - 15817799
Alignment:
Q  311 atgaattatttatgacttgtttaagaaattcataatt 347  Q
    |||||||| |||||| |||||||||||||||||||||    
T  15817835 atgaattaattatgatttgtttaagaaattcataatt 15817799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 566
Target Start/End: Original strand, 15863518 - 15863610
Alignment:
Q  475 atgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgtttt-ttattttacaatgtcatttttcaaacat 566  Q
    |||| ||||||||||| | |||||| |  || |||| |||||||||  || ||||| || |||| ||||||||||||||||||||||| ||||    
T  15863518 atgcctatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtatttttttattttacaatgtcatttttcagacat 15863610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 40470225 - 40470281
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataat 369  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||    
T  40470225 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataat 40470281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 33387082 - 33386975
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagca 413  Q
    ||||| |||||| ||||||||||||||||||||||||   | |||||||||||||||| ||||| |||| || ||||||| ||||| |||||||| ||      
T  33387082 aattaattatgaattgtttaagaaattcataattatgaggagtaaaaattcataattaatccgt-cctagtcggaaaaatttaattatttgtgtaaaggc 33386984  T
Q  414 atattttaa 422  Q
    |||||||||    
T  33386983 atattttaa 33386975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 12224864 - 12224923
Alignment:
Q  504 agaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaa 563  Q
    |||||||||||||||||||||| |||| ||||||||  ||||||||||||||||||||||    
T  12224864 agaatcttaaattacaaagttataatatgtgtttttatttttacaatgtcatttttcaaa 12224923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 23581526 - 23581399
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccc 380  Q
    |||||||||||||| |||  ||||||  | |  ||||| |||||| ||||| ||||||||| |||||||||  |||||||| ||||||| | | ||||||    
T  23581526 ccatgaaattttggagttgttaaacgagatactaattaattatgaattgttaaagaaattcttaattatggggaataaaaaatcataataaattcgtccc 23581427  T
Q  381 taatccgaaaaatctaattttttgtgta 408  Q
    ||||| |||||||||| || ||||||||    
T  23581426 taatcagaaaaatctatttatttgtgta 23581399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 49010217 - 49010160
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||    
T  49010217 aattaattataaattgtttaagaaattcataattatggaaaataaaaaatcataatta 49010160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 20606108 - 20606020
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttt 402  Q
    ||||| |||||| |||||||||||||||||||||||||  ||||||| ||||| || | || ||||||| || ||||||||||| ||||    
T  20606108 aattaattatgaattgtttaagaaattcataattatgggtaataaaatttcatgataaatctgtccctagtcggaaaaatctaactttt 20606020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 44832284 - 44832172
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||||||||||||||||||  |  ||||||||| | | |||||||| |  ||||||| |||||||||||||| |||| ||  |||||||||||||  |||    
T  44832284 tctagatcacttttttggaccacacgtatattaaaaggtaaaaaataagaagaatctcaaattacaaagttaaaatatgtactttttattttacatggtc 44832185  T
Q  554 atttttcaaacat 566  Q
    |||||||| ||||    
T  44832184 atttttcagacat 44832172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 8725278 - 8725322
Alignment:
Q  327 ttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    |||||||||||||| |||||||||| |||||||||||||||||||    
T  8725278 ttgtttaagaaatttataattatgggaaataaaaattcataatta 8725322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 13072511 - 13072599
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    |||||||||||||| | || ||||||  | |  ||||| |||||| |||||||||||||||||||||||||| ||  ||||||||||||    
T  13072511 ccatgaaattttggagattttaaacgagatactaattaattatgaattgtttaagaaattcataattatggagaaccaaaattcataat 13072599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 20611890 - 20611802
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttt 402  Q
    ||||| |||||| | |||||||||||||||||||||||  ||||||||||| | || | || ||||||| || ||||||||||| ||||    
T  20611890 aattaattatgaatagtttaagaaattcataattatgggtaataaaaattcgtgataaatctgtccctagtcagaaaaatctaactttt 20611802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 44832424 - 44832345
Alignment:
Q  327 ttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgt 407  Q
    |||||||||||||||||| ||||||  |||||||||||||||| | | |||||||| |  ||||||||| |||||||||||    
T  44832424 ttgtttaagaaattcatatttatggggaataaaaattcataataaattcgtccctagttggaaaaatct-attttttgtgt 44832345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 562
Target Start/End: Complemental strand, 20609241 - 20609135
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||||||||||||||||||  | |||||||||||| | |||||||  |  |||||||  |||||||  |||||||||  | ||||||||||||||  |||    
T  20609241 tctagatcacttttttggaccacgcgtatattataaggtaaaaaa--aaaagaatctctaattacagggttagaatatctattttttattttacagggtc 20609144  T
Q  554 atttttcaa 562  Q
    |||||||||    
T  20609143 atttttcaa 20609135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 20609401 - 20609313
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattttt 402  Q
    ||||| |||||| | |||||||||||||||||||||||  ||||||||||| | || | || ||||||| |  ||||||||||| ||||    
T  20609401 aattaattatgaatagtttaagaaattcataattatgggtaataaaaattcgtgataaatctgtccctagttagaaaaatctaactttt 20609313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 32073201 - 32073089
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtc 553  Q
    |||||||||||||||||||  | | |||||||| | | | |||||| |  ||||||| || ||| | |||||||||| ||  |||||||||||||  |||    
T  32073201 tctagatcacttttttggaccacgtgtatattacaaggtcaaaaataagaagaatctcaatttagagagttagaatatgtaatttttattttacacggtc 32073102  T
Q  554 atttttcaaacat 566  Q
    |||||||||||||    
T  32073101 atttttcaaacat 32073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 566
Target Start/End: Complemental strand, 23581317 - 23581230
Alignment:
Q  479 gtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacat 566  Q
    |||||||||||| | |||| | |  ||| ||| ||||||||  ||||||||| || ||||| ||||||||| ||||||||||||||||    
T  23581317 gtatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaattttacaaggtcatttttcaaacat 23581230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 3113804 - 3113862
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  3113804 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 3113862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 5555947 - 5555889
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  5555947 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 5555889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 7003208 - 7003150
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  7003208 aattaattataaattgtttaagaaattcataattatgtgggaataaaaattcataatta 7003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 7049079 - 7049021
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  7049079 aattaattataaattgtttaagaaattcataattatgtgggaataaaaattcataatta 7049021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 8394610 - 8394552
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  8394610 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 8394552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 14776789 - 14776847
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  14776789 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 14776847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 23582454 - 23582396
Alignment:
Q  311 atgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    |||||||| ||||||||| || |||||||||||| ||||||  ||||||||||| ||||    
T  23582454 atgaattaattatgactttttaaagaaattcatagttatggggaataaaaattcctaat 23582396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 25709043 - 25709005
Alignment:
Q  333 aagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  25709043 aagaaattcataattatgggaaacaaaaattcataatta 25709005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 31252488 - 31252538
Alignment:
Q  329 gtttaagaaattcataattatggaaaataaaaattcataattagtccgtcc 379  Q
    ||||||||||||||||| || |  ||||||||||||||||||| |||||||    
T  31252488 gtttaagaaattcataactacgagaaataaaaattcataattattccgtcc 31252538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 36658662 - 36658604
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  36658662 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 36658604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 36631288 - 36631243
Alignment:
Q  327 ttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||    
T  36631288 ttgtttaagaaattcataattatgagggaataaaaattcataatta 36631243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 12224378 - 12224298
Alignment:
Q  357 aaaaattcataattagtccgtccctaatccgaaaaatctaatt-ttttgtgtagagcaatattttaatgtcttaaacatgc 436  Q
    ||||||||||||||| ||  ||||||||| ||||| ||||||| ||||||| | | | ||||||||||||| |||| ||||    
T  12224378 aaaaattcataattaatcattccctaatcggaaaattctaatttttttgtgaaaaaccatattttaatgtcctaaatatgc 12224298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 35338351 - 35338295
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataat 369  Q
    |||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  35338351 gaattaattatgaattttttaaaaaattcataattatggaaaataaaaattcataat 35338295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 38269093 - 38269215
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccctaatccgaaaaatctaattt-tttgtgtagagc 412  Q
    ||||| |||| | |||||||||||||||||||||||||  |||||||||||||||||| |  ||||||  ||  |||||| |||||| ||| |||| |||    
T  38269093 aattaattataaattgtttaagaaattcataattatggggaataaaaattcataattaatttgtccctggtcgaaaaaatttaatttatttatgtaaagc 38269192  T
Q  413 aatattttaatgtcttaaacatg 435  Q
     ||||||||| ||  ||||||||    
T  38269193 tatattttaacgtgctaaacatg 38269215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 1050847 - 1050917
Alignment:
Q  356 taaaaattcataattagtccgtccctaatccgaaaaatctaattttttgtgtagagcaatattttaatgtc 426  Q
    ||||||||||||| || |||| ||||||||  |||| |||||||||||||||| ||| || ||||||||||    
T  1050847 taaaaattcataaataatccgaccctaatcgaaaaattctaattttttgtgtaaagccatgttttaatgtc 1050917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 561
Target Start/End: Complemental strand, 8788165 - 8788056
Alignment:
Q  454 tctagatcacttttttggattatgcgtatattataggataaaaaat--gatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatg 551  Q
    |||| ||||||||||||||  |  ||||||||||||| | ||||||  ||  | ||||| |||||||||||||||||||  ||||||||||||||||  |    
T  8788165 tctatatcacttttttggaccacacgtatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacaggg 8788066  T
Q  552 tcatttttca 561  Q
    | ||||||||    
T  8788065 ttatttttca 8788056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 8788285 - 8788246
Alignment:
Q  330 tttaagaaattcataattatggaaaataaaaattcataat 369  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  8788285 tttaagaaattcataattatggtgaataaaaattcataat 8788246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 13489766 - 13489699
Alignment:
Q  281 ccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataatta 348  Q
    ||||||||||||||  |||||||| |   ||||||||| |||||| ||||||||||| ||||||||||    
T  13489766 ccatgaaattttggaatttgtaaatgaggaatgaattaattatgaattgtttaagaatttcataatta 13489699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 577
Target Start/End: Original strand, 23236700 - 23236815
Alignment:
Q  462 acttttttggattatgcgtatattataggataaaaaatgatgagaatcttaaattacaaagttagaatacgtgttttttattttacaatgtcatttttca 561  Q
    ||||||||||| || ||| ||||||||   |||||||| |  | ||| | ||||||||| | |||||||  ||| |||||||| |||  |||||||||||    
T  23236700 acttttttggactacgcgcatattatacagtaaaaaataagaataatttcaaattacaaggctagaatatatgtgttttatttcacagggtcatttttca 23236799  T
Q  562 aacattgtgtatatta 577  Q
    ||||| ||||||||||    
T  23236800 aacatagtgtatatta 23236815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 192390 - 192332
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattat-ggaaaataaaaattcataatta 371  Q
    ||||| |||| | ||||||||||||||||||||||| ||  ||||||||||||||||||    
T  192390 aattaattataaattgtttaagaaattcataattatgggggaataaaaattcataatta 192332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 31501402 - 31501460
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  31501402 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 31501460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 39435181 - 39435123
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  39435181 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 39435123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 1776071 - 1776116
Alignment:
Q  327 ttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||    
T  1776071 ttgtttaagaaattcataattatgagggaataaaaattcataatta 1776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 573
Target Start/End: Original strand, 21548582 - 21548643
Alignment:
Q  512 aaattacaaagttagaatacgtgttttttattttacaatgtcatttttcaaacattgtgtat 573  Q
    |||||||| ||||| ||||  | ||||||||||||||  ||||||||||| |||||||||||    
T  21548582 aaattacagagttataatatctattttttattttacagggtcatttttcagacattgtgtat 21548643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 30297636 - 30297692
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||||  ||| ||||||||||||||    
T  30297636 aattaattataaattgtttaagaaattcataattatggggaat-aaaattcataatta 30297692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 11779245 - 11779310
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtccct 381  Q
    ||||| |||||| |||||||| |||||||||||||||| ||  ||| ||||||||||| | |||||||    
T  11779245 aattaattatgaattgtttaaaaaattcataattatgggaa--aaatattcataattaattcgtccct 11779310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 13818448 - 13818404
Alignment:
Q  328 tgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||    
T  13818448 tgtttaagaaattcataattatgagggaataaaaattcataatta 13818404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 35911411 - 35911451
Alignment:
Q  311 atgaattatttatgacttgtttaagaaattcataattatgg 351  Q
    ||||||||  ||||| |||||||||||||||||||||||||    
T  35911411 atgaattaactatgaattgtttaagaaattcataattatgg 35911451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 279 - 370
Target Start/End: Original strand, 2104 - 2195
Alignment:
Q  279 cgccatgaaattttggtgtttgtaaacggcaaatgaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataatt 370  Q
    |||||||||||||| | |||| || |||   || |||||| |||||| |||||||||||||||||||||||| | |||| ||||||||||||    
T  2104 cgccatgaaattttagagtttttagacgatgaacgaattaattatgaattgtttaagaaattcataattatgaagaatacaaattcataatt 2195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 8505 - 8436
Alignment:
Q  313 gaattatttatgacttgtttaagaaattcataattatggaaaataaaaattcataattagtccgtcccta 382  Q
    |||||| |||| | |||||||||||||||||||||||||  |||||||||| | ||| | ||||||||||    
T  8505 gaattaattattaattgtttaagaaattcataattatggggaataaaaatttaaaataaatccgtcccta 8436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 480139 - 480197
Alignment:
Q  314 aattatttatgacttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    ||||| |||| | |||||||||||||||||||||||| |  ||||||||||||||||||    
T  480139 aattaattataaattgtttaagaaattcataattatgagggaataaaaattcataatta 480197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 994 - 949
Alignment:
Q  327 ttgtttaagaaattcataattatg-gaaaataaaaattcataatta 371  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||    
T  994 ttgtttaagaaattcataattatgagggaataaaaattcataatta 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University