View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_50 (Length: 344)
Name: NF18317_high_50
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 47731159 - 47731415
Alignment:
| Q |
21 |
aagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac-tgacccattcatagaaatgtagctcattctgcatatgatgaga |
119 |
Q |
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| T |
47731159 |
aagggactctatgaaacgaagagaacaccaagggcatgaccagaaagaggaagaacctgacccgttcatagaaatgtagcccattctgcatatgatgaga |
47731258 |
T |
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| Q |
120 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47731259 |
cttttcttcattgtgtgtgtgtgattgaacccattctaagcacttgtggcagcaagcaggatttaatcaatctgattttttctctaacgacgacactata |
47731358 |
T |
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| Q |
220 |
aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaacaatt |
276 |
Q |
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| T |
47731359 |
aattggatcaagaacagggtgatggggccttactatttcctttttgcagcaacaatt |
47731415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 272
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
| Q |
111 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
210 |
Q |
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| T |
50823520 |
atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag |
50823423 |
T |
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| Q |
211 |
gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
272 |
Q |
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| T |
50823422 |
gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac |
50823362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 272
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
| Q |
120 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata |
219 |
Q |
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|||||||||| || |||||||||||| ||||||||||| ||||||| | || | || ||||||||||| ||| ||||||| || || ||||||||| |
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| T |
26334526 |
cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata |
26334429 |
T |
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| Q |
220 |
aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
272 |
Q |
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| T |
26334428 |
aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac |
26334376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 47731491 - 47731538
Alignment:
| Q |
274 |
attcaaggtatgattgataccctcaaagcttcttatcctttcatctct |
321 |
Q |
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| T |
47731491 |
attcaaggtatggttgataccctcaaagcttcttatcctttcatctct |
47731538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 276
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
| Q |
111 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
210 |
Q |
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||||||||||||||||||||| | ||| ||||| | ||||||||||| || ||| ||| || | | |||||||||| ||||||||| ||| || | |
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| T |
24873567 |
atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa |
24873663 |
T |
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| Q |
211 |
gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt |
276 |
Q |
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|| ||||||||||||| |||| | | |||||||||| ||||||| |||||||||||||||||||||| |
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| T |
24873664 |
gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt |
24873730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24873185 - 24873130
Alignment:
| Q |
21 |
aagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac |
76 |
Q |
| |
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||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
24873185 |
aagggaccctatgaaaccaagagaactccaagggcaagaccaaaaagaggaagaac |
24873130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
| Q |
239 |
tgatggggccttactatttcctttttgcagcaacaatt |
276 |
Q |
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| T |
43709297 |
tgatgggcccttactatttcctttttgcagcaacaatt |
43709260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 43709184 - 43709139
Alignment:
| Q |
274 |
attcaaggtatgattgataccctcaaagcttcttatcctttcatct |
319 |
Q |
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|||||||||||| ||||||||||| |||||| |||||||| ||||| |
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| T |
43709184 |
attcaaggtatggttgataccctctaagcttgttatccttccatct |
43709139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 27154928 - 27154968
Alignment:
| Q |
274 |
attcaaggtatgattgataccctcaaagcttcttatccttt |
314 |
Q |
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| T |
27154928 |
attcaaggtatggttgacaccctcaaagcttcttatccttt |
27154968 |
T |
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