View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_56 (Length: 328)
Name: NF18317_high_56
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 32885274 - 32884976
Alignment:
| Q |
13 |
acatcatctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggcaacattgtgccatctttcaggagtttctctatcat |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |
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| T |
32885274 |
acatcttctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgtgccatctttcaggagtttccctgtcat |
32885175 |
T |
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| Q |
113 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgacatttgttgatgaatgaatgaatatgaataatattgttagaaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885174 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaa |
32885075 |
T |
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| Q |
213 |
gaatatgattggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgtt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885074 |
gaatatgattggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgtt |
32884976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 32899317 - 32899019
Alignment:
| Q |
13 |
acatcatctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggcaacattgtgccatctttcaggagtttctctatcat |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |
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| T |
32899317 |
acatcttctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgtgccatctttcaggagtttccctgtcat |
32899218 |
T |
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| Q |
113 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgacatttgttgatgaatgaatgaatatgaataatattgttagaaaaa |
212 |
Q |
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| T |
32899217 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaa |
32899118 |
T |
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| Q |
213 |
gaatatgattggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgtt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32899117 |
gaatatgattggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgtt |
32899019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 32880447 - 32880147
Alignment:
| Q |
13 |
acatcatctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggcaacattgtgccatctttcaggagtttctctatcat |
112 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32880447 |
acatcttctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgtgccatctttcaggagtttctctatcat |
32880348 |
T |
|
| Q |
113 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgacatttgttgatgaatgaatgaatatgaataatattgttagaaaaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32880347 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaa |
32880248 |
T |
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| Q |
213 |
gaatatg--attggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgt |
310 |
Q |
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||||||| |||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32880247 |
gaatatggttttggttatttgttttttagtcaagtgaaagtatgggaaagaggtgactaattgagttccttatatgcaggagaaaaagtgcatgacatgt |
32880148 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
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| |
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|
| T |
32880147 |
t |
32880147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 32867301 - 32867154
Alignment:
| Q |
13 |
acatcatctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggcaacattgtgccatctttcaggagtttctctatcat |
112 |
Q |
| |
|
||||| ||||||||||| ||||| || || ||||||||||||||||||||||| |||| ||||||||||| ||||| | || |||| ||||||||||| |
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| T |
32867301 |
acatcttctttgaggatttcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccacttatctggagattctctatcat |
32867202 |
T |
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| Q |
113 |
ataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaag |
160 |
Q |
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||| |||||| ||| |||||| ||||||| ||||||| |||||||| |
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| T |
32867201 |
atatagccaaagctctttcaaattgtttgttttgccttggagtccaag |
32867154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 7858954 - 7859093
Alignment:
| Q |
19 |
tctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggcaacattgtgccatctttcaggagtttctctatcatataaag |
118 |
Q |
| |
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|||||||| ||||||||||| || |||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||| ||||| |||||||||| || |
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| T |
7858954 |
tctttgagtatctcatagtgccttttaacatcctcaacagattttccgaccactttagccacattgtgccacctgtcaggtgtttccctatcatatatag |
7859053 |
T |
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| Q |
119 |
ccaatgcttgttcaaacagtttgttctgccttgcagtcca |
158 |
Q |
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| | ||| | |||||| |||||||| |||||||| ||||| |
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| T |
7859054 |
caagtgcctcttcaaatagtttgttttgccttgctgtcca |
7859093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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