View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_high_60 (Length: 319)
Name: NF18317_high_60
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 38752750 - 38752444
Alignment:
| Q |
1 |
ctccttgtggagcctgcgaattcttgaggagaaaatgtgttagaggttgtgtttttgcaccttacttttgccatgaacaaggtgctacccattttgcagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38752750 |
ctccttgtggagcctgcaaattcttgaggagaaaatgtgttagaggttgtatttttgcaccttacttttgccatgaacaaggtgctacccattttgcagc |
38752651 |
T |
|
| Q |
101 |
tattcataaggtctttggtgcaagtaatgtttcaaagcttcttgcacacctccctgtgaccgatcgttgtgaagctgcagtcacaatctcttatgaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38752650 |
tattcataaggtctttggtgcaagtaatgtttcaaagcttcttgcacacctccctgtgaccgatcgttgtgaagctgcagtcacaatctcttatgaagct |
38752551 |
T |
|
| Q |
201 |
caagctagacttcaagatccaatttatggatgtgttgcccatatttttgcactccaacaacaggtttgttcatctctcgtgatcttaaactgaaaaccct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38752550 |
caagctagacttcaagatccaatttatggatgtgttgcccatatttttgcactccagcaacaggtttgttcatctctcgtgatcttaaactgaaaaccct |
38752451 |
T |
|
| Q |
301 |
agatggt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
38752450 |
agatggt |
38752444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 30903970 - 30904236
Alignment:
| Q |
1 |
ctccttgtggagcctgcgaattcttgaggagaaaatgtgttagaggttgtgtttttgcaccttacttttgccatgaacaaggtgctacccattttgcagc |
100 |
Q |
| |
|
||||||||||||| ||| |||| ||||| ||||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||| |
|
|
| T |
30903970 |
ctccttgtggagcttgcaaatttttgagaagaaaatgtataagaggttgtgtttttgcaccttatttttctcatgaacaaggtgctacacatttttcagc |
30904069 |
T |
|
| Q |
101 |
tattcataaggtctttggtgcaagtaatgtttcaaagcttcttgcacacctccctgtgaccgatcgttgtgaagctgcagtcacaatctcttatgaagct |
200 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||| | ||||| || ||||| || || |||||||||||||||||| |
|
|
| T |
30904070 |
cattcataaggtttttggtgcaagcaatgtctcaaagcttcttgctcatctccctgtaagtgatcgctgcgaagccgctgttacaatctcttatgaagct |
30904169 |
T |
|
| Q |
201 |
caagctagacttcaagatccaatttatggatgtgttgcccatatttttgcactccaacaacaggttt |
267 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | ||||||||||| || ||||||||||||| |
|
|
| T |
30904170 |
caagctagacttcaagatcctatttatggatgtgtttcacatatttttgccctacaacaacaggttt |
30904236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University