View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_64 (Length: 307)

Name: NF18317_high_64
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_64
NF18317_high_64
[»] chr7 (1 HSPs)
chr7 (14-307)||(48486314-48486609)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 48486314 - 48486609
Alignment:
Q  14 catcatttaaactcttgtgtttcattcagtggtcataggtgattaattt--gttatatatttcaattcatgagtcatgttcaaacatgatttatgacatc 111  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48486314 catcatttaaactcttatgtttcattcagtggtcataggtgattaatttttgttatatatttcaattcatgagtcatgctcaaacatgatttatgacatc 48486413  T
Q  112 aaagaccaagaagtatgctataaccaaatcagatgctagagcatatatagcccttaacccttcctactaagaagaatgccgactaatgcatgtagcctat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486414 aaagaccaagaagtatgctataaccaaatcagatgctagagcatatatagcccttaacccttcctactaagaagaatgccgactaatgcatgtagcctat 48486513  T
Q  212 gtcatctaaattacaagttcacacacaattagatctctatattttatgctaaacttaacttatagattcacagcatcatcagtcatgaatcatgat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486514 gtcatctaaattacaagttcacacacaattagatctctatattttatgctaaacttaacttatagattcacagcatcatcagtcatgaatcatgat 48486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University