View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_65 (Length: 307)

Name: NF18317_high_65
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_65
NF18317_high_65
[»] chr5 (1 HSPs)
chr5 (10-307)||(7594407-7594704)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 7594704 - 7594407
Alignment:
Q  10 ataatacttgtaaatattcaacnnnnnnnnnncatcaaatctacctattaatctcattcatccaattggagagggttgatagaggagcaattatcatata 109  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7594704 ataatacttgtaaatattcaacaaaaaaaaaacatcaaatctacctattaatctcattcatccaattggagagggttgatagaggagcaattatcatata 7594605  T
Q  110 tggcccatccaatcctttcgattttagatgagaaagaaacccaattgtttggattgtcttcccaagacccatttgatcagcaagaatcccattcaatcca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7594604 tggcccatccaatcctttcgattttagatgagaaagaaacccaattgtttggattgtcttcccaagacccatttgatcagcaagaatcccattcaatcca 7594505  T
Q  210 ttttgccacaaggaaatcagccacttaacacccttcagttgataagatttcaattttccaccagttagtaaaggcatcagctccctctgctctttctc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7594504 ttttgccacaaggaaatcagccacttaacacccttcagttgataagatttcaattttccaccagttagtaaaggcatcagctccctctgctctttctc 7594407  T

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