View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_high_70 (Length: 302)

Name: NF18317_high_70
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_high_70
NF18317_high_70
[»] chr2 (5 HSPs)
chr2 (1-280)||(1615925-1616193)
chr2 (170-280)||(18355323-18355434)
chr2 (169-280)||(23348990-23349102)
chr2 (170-280)||(10328902-10329013)
chr2 (185-280)||(12741703-12741799)
[»] scaffold0096 (1 HSPs)
scaffold0096 (169-280)||(27409-27520)
[»] scaffold0035 (1 HSPs)
scaffold0035 (168-280)||(35061-35174)
[»] chr8 (5 HSPs)
chr8 (170-280)||(14678031-14678142)
chr8 (170-280)||(27541569-27541679)
chr8 (170-276)||(5657771-5657878)
chr8 (170-276)||(31100886-31100993)
chr8 (170-213)||(23738657-23738700)
[»] chr6 (7 HSPs)
chr6 (169-280)||(3065697-3065808)
chr6 (170-280)||(10092512-10092623)
chr6 (185-276)||(33045445-33045537)
chr6 (169-248)||(16246701-16246780)
chr6 (185-284)||(8976419-8976519)
chr6 (185-248)||(30908412-30908475)
chr6 (171-213)||(4660253-4660295)
[»] chr3 (10 HSPs)
chr3 (170-276)||(17681767-17681873)
chr3 (170-280)||(12538646-12538756)
chr3 (170-280)||(53973296-53973407)
chr3 (169-280)||(31685076-31685188)
chr3 (169-280)||(37982348-37982460)
chr3 (185-280)||(19882121-19882217)
chr3 (170-280)||(2549937-2550047)
chr3 (169-278)||(24761910-24762020)
chr3 (170-278)||(24815915-24816024)
chr3 (170-246)||(53352806-53352882)
[»] chr7 (4 HSPs)
chr7 (169-280)||(1262087-1262199)
chr7 (165-280)||(43071392-43071508)
chr7 (169-280)||(48849817-48849929)
chr7 (169-280)||(26909991-26910103)
[»] chr5 (6 HSPs)
chr5 (170-280)||(22009538-22009649)
chr5 (168-280)||(9043800-9043913)
chr5 (170-280)||(7473499-7473610)
chr5 (171-280)||(30442557-30442667)
chr5 (170-248)||(19085420-19085498)
chr5 (185-265)||(26840989-26841070)
[»] chr4 (2 HSPs)
chr4 (170-278)||(29863373-29863482)
chr4 (169-213)||(12506435-12506479)
[»] scaffold0045 (1 HSPs)
scaffold0045 (170-276)||(11648-11755)
[»] scaffold0596 (1 HSPs)
scaffold0596 (170-280)||(654-765)
[»] scaffold0157 (1 HSPs)
scaffold0157 (169-213)||(13998-14042)
[»] chr1 (1 HSPs)
chr1 (174-248)||(50990911-50990985)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1616193 - 1615925
Alignment:
Q  1 ctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcatttatttatttattcatgnnnnnnnnnnnnataaataaaagttttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||    
T  1616193 ctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcatttatttatttattcatgtttttcttttttataaataaaagttttgat 1616094  T
Q  101 gagttaggctaaggaggtacatcatggttagacggatctcatggttacgatgttatgttacagtattcaatcatacttatattcaatctttgttaacatt 200  Q
    ||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1616093 gagttaggctaaggaggtaaatcatggt-----------catggttacgatgttatgttacagtattcaatcatccttatatccaatctttgttaacatt 1616005  T
Q  201 gttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaa 280  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1616004 gttaatgactttgtaaccattaaatctaaatggtttttgctccaaacaagggagatcgttggatcgcatcatttggctaa 1615925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 18355434 - 18355323
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 268  Q
    |||||||||||||| ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||||||||||||| ||    
T  18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca 18355335  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  18355334 tcatttggctaa 18355323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 23349102 - 23348990
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc 267  Q
    ||||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| |    
T  23349102 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 23349003  T
Q  268 atcatttggctaa 280  Q
    |||||||||||||    
T  23349002 atcatttggctaa 23348990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 10329013 - 10328902
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgct-tcaaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||| ||||| | | | |||||||||||| ||||||||| ||    
T  10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca 10328914  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  10328913 tcatttggctaa 10328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 12741703 - 12741799
Alignment:
Q  185 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaa 280  Q
    ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||| ||||| ||||||||| ||||||||||||||    
T  12741703 aatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggctaa 12741799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 27409 - 27520
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca 268  Q
    ||||||||||||||  ||||||||||||||||| |||||| |||| || |  ||||||||||||||||| ||| ||||||||||||| ||||||||| ||    
T  27409 aatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctca 27508  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  27509 tcatttggctaa 27520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 35061 - 35174
Alignment:
Q  168 caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcg 266  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| | ||||||||||||| ||||||||     
T  35061 caatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatct 35160  T
Q  267 catcatttggctaa 280  Q
    ||||||||||||||    
T  35161 catcatttggctaa 35174  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 14678142 - 14678031
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| | |||||||||||| ||||||||| ||    
T  14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 14678043  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  14678042 tcatttggctaa 14678031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 27541679 - 27541569
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat 269  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||| ||| ||| ||||||||||| | ||||||||| |||    
T  27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat 27541580  T
Q  270 catttggctaa 280  Q
    |||||||||||    
T  27541579 catttggctaa 27541569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 5657771 - 5657878
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||| ||| ||||||||||| || |  ||||||||||| ||||| ||| | |||||||||||| ||||||||| ||    
T  5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca 5657870  T
Q  269 tcatttgg 276  Q
    ||||||||    
T  5657871 tcatttgg 5657878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 31100993 - 31100886
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| ||    ||||||||||||||||| ||| | |||||||||||| |||| |||| ||    
T  31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca 31100894  T
Q  269 tcatttgg 276  Q
    ||||||||    
T  31100893 tcatttgg 31100886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 23738657 - 23738700
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttg 213  Q
    |||||||||||||  ||||||||||||||||| |||||||||||    
T  23738657 atcatacttatatctaatctttgttaacattgctaatgactttg 23738700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 3065697 - 3065808
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca 268  Q
    ||||||||||||||  ||||||||||||||| | ||||||||||| || |  ||||||||||||||||| ||| ||||||||||||  ||||||||| ||    
T  3065697 aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctca 3065796  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  3065797 tcatttggctaa 3065808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 10092512 - 10092623
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || |  |||| |||||||||||| ||| | |||||||||||| ||||||||| ||    
T  10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca 10092611  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  10092612 tcatttggctaa 10092623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 33045537 - 33045445
Alignment:
Q  185 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgcatcatttgg 276  Q
    ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| | ||| |||||||| ||||||||| ||||||||||    
T  33045537 aatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttgg 33045445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 16246701 - 16246780
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 248  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||| || |  ||| ||||||||||||| ||| ||||||    
T  16246701 aatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaaca 16246780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 8976419 - 8976519
Alignment:
Q  185 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgcatcatttggctaaaca 283  Q
    |||||||||||| |||| ||||||||||  || |  ||||||||||||||||| ||| | ||| |||||||  ||||||||| ||| |||| ||||||||    
T  8976419 aatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattatttagctaaaca 8976518  T
Q  284 t 284  Q
    |    
T  8976519 t 8976519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 30908475 - 30908412
Alignment:
Q  185 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 248  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||||| ||| ||||||    
T  30908475 aatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaaca 30908412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 4660295 - 4660253
Alignment:
Q  171 tcatacttatattcaatctttgttaacattgttaatgactttg 213  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttg 4660253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 17681767 - 17681873
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat 269  Q
    |||||||||||||  |||||||||||||||||||||||| |||| || |  ||||||||||||||||| ||| |||||||||| || ||||||||| |||    
T  17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat 17681866  T
Q  270 catttgg 276  Q
    |||||||    
T  17681867 catttgg 17681873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 12538756 - 12538646
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat 269  Q
    |||||||||||||  ||||||||||||| ||  |||||| |||| || |  ||||||||||||||||| ||| ||||||||||||| ||||||||| |||    
T  12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 12538657  T
Q  270 catttggctaa 280  Q
    |||||||||||    
T  12538656 catttggctaa 12538646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 53973407 - 53973296
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||    
T  53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca 53973308  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  53973307 tcatttggctaa 53973296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 31685076 - 31685188
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 267  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||| || |  ||||||||||||||||| ||| | ||| |||||||| ||||| ||| |    
T  31685076 aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctc 31685175  T
Q  268 atcatttggctaa 280  Q
    |||||||||||||    
T  31685176 atcatttggctaa 31685188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 37982348 - 37982460
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 267  Q
    ||||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| | |||||||||||  ||||||||| |    
T  37982348 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 37982447  T
Q  268 atcatttggctaa 280  Q
    |||||||||||||    
T  37982448 atcatttggctaa 37982460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 19882217 - 19882121
Alignment:
Q  185 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgcatcatttggctaa 280  Q
    ||||||||||||||||| ||||||  |||||| |  ||||||||||||||||| ||| | |||||||||||  ||||||||| ||||||||||||||    
T  19882217 aatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaa 19882121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 2549937 - 2550047
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||  ||||||||| ||||||||||| || |  |||||||||||| |||| ||| | |||||||||||| |||||||||  |    
T  2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatc-ta 2550035  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  2550036 tcatttggctaa 2550047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 24762020 - 24761910
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 267  Q
    ||||||||||||||  |||| || ||||||||| ||||||||||| || |  ||||||||||||||||| ||| | |||||| |  |  ||||||||| |    
T  24762020 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc 24761921  T
Q  268 atcatttggct 278  Q
    |||||||||||    
T  24761920 atcatttggct 24761910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 24815915 - 24816024
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  |||| || ||||||||| ||||||||||| || |  ||||||||||||||||| ||| | |||| | |  || ||||||||| ||    
T  24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca 24816014  T
Q  269 tcatttggct 278  Q
    ||||||||||    
T  24816015 tcatttggct 24816024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 53352882 - 53352806
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa 246  Q
    |||||||||||||  |||| || ||||||||| ||||||||||| || |  |||||||||| |||||| ||| ||||    
T  53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaa 53352806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 1262087 - 1262199
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 267  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| | |||||||||| | ||||||||| |    
T  1262087 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctc 1262186  T
Q  268 atcatttggctaa 280  Q
    |||||||||||||    
T  1262187 atcatttggctaa 1262199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 43071508 - 43071392
Alignment:
Q  165 attcaatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttgga 263  Q
    |||| |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| |||||||    
T  43071508 attctatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttgga 43071409  T
Q  264 tcgcatcatttggctaa 280  Q
    || ||||||||||||||    
T  43071408 tctcatcatttggctaa 43071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 48849929 - 48849817
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 267  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||    ||||||||||||||||| ||| | ||||||||||  | |||||||| |    
T  48849929 aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc 48849830  T
Q  268 atcatttggctaa 280  Q
    |||||||||||||    
T  48849829 atcatttggctaa 48849817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 26910103 - 26909991
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 267  Q
    ||||||||||||||  ||||||||||||||||| |||| |||||| || |  ||||||||||||| ||| ||| | |||||||||||  | |||||||      
T  26910103 aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt 26910004  T
Q  268 atcatttggctaa 280  Q
    |||||||||||||    
T  26910003 atcatttggctaa 26909991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 22009649 - 22009538
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| |||||| |||| || |  ||||||||||||||||| ||| | |||||||||||| ||||||||| ||    
T  22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 22009550  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  22009549 tcatttggctaa 22009538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 9043800 - 9043913
Alignment:
Q  168 caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcg 266  Q
    |||||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| | |||||||||||| |||||||||     
T  9043800 caatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct 9043899  T
Q  267 catcatttggctaa 280  Q
    ||||||||||||||    
T  9043900 catcatttggctaa 9043913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 7473610 - 7473499
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| | |||||||||||| ||||||||| ||    
T  7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 7473511  T
Q  269 tcatttggctaa 280  Q
    |||||| |||||    
T  7473510 tcatttagctaa 7473499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 30442667 - 30442557
Alignment:
Q  171 tcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcat 269  Q
    |||| |||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| |||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  270 catttggctaa 280  Q
    |||||||||||    
T  30442567 catttggctaa 30442557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 19085498 - 19085420
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 248  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| ||||||    
T  19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaca 19085420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 26841070 - 26840989
Alignment:
Q  185 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatc 265  Q
    ||||||||||||||||| |||||| |||| || |  ||||||||||||||||| ||| | |||||||||||  |||||||||    
T  26841070 aatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatc 26840989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 29863482 - 29863373
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| | ||||||||| || |  ||||||||||||||||| ||| | |||||||||||| ||||||||| ||    
T  29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
Q  269 tcatttggct 278  Q
    ||||||||||    
T  29863382 tcatttggct 29863373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 12506435 - 12506479
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttg 213  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||    
T  12506435 aatcatacttatatctaatctttgttaacattgctaatgactttg 12506479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 11755 - 11648
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 268  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||| |||||||  || | |||||||||||| ||||||||| ||    
T  11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca 11656  T
Q  269 tcatttgg 276  Q
    ||||||||    
T  11655 tcatttgg 11648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 654 - 765
Alignment:
Q  170 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgca 268  Q
    |||||||||||||   |||||||||||||||| ||||||  ||| || |  |||||||||||||||||  || ||||  |||||||| ||||||||| ||    
T  654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca 753  T
Q  269 tcatttggctaa 280  Q
    ||||||||||||    
T  754 tcatttggctaa 765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 14042 - 13998
Alignment:
Q  169 aatcatacttatattcaatctttgttaacattgttaatgactttg 213  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||    
T  14042 aatcatacttatatctaatctttgttaacattgctaatgactttg 13998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 50990911 - 50990985
Alignment:
Q  174 tacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 248  Q
    |||||||||  ||||||||||||||||| | || |||||| || |  ||||||||||||||||| ||| ||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaaca 50990985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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