View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_72 (Length: 301)
Name: NF18317_high_72
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 39290978 - 39291254
Alignment:
| Q |
1 |
ccctcgctgggaagcatcgagaaatgactctaacttctcaatctcgtcaacaatacaagtgaagtcatgaaaaagataaatgttatccatgacattgctt |
100 |
Q |
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| T |
39290978 |
ccctcgctgggaagcatcaagaaatgactctaacttctcaatctcgtcaacaatacaagtgaagtcatgaaaaagataaatgttatccatgacattgctt |
39291077 |
T |
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| Q |
101 |
agatcatgacttaataggactttttacttctgcagaagtcggaaagcttcctaagcctttgagtttggtggagaagagaaggaagaaacttcaaatatat |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39291078 |
agatcatgacttaataggactttttacttct-------tcggaaaacttcccgagcctttgagtttggtggagaagagaaggaagaaacttcaaatatat |
39291170 |
T |
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| Q |
201 |
gcgagatagtcataattataaacatagataactaaaaaacgaactgtcattatggacacattgcgcagagggagtaaaccttgg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39291171 |
gcgagatagtcataattataaacatagataactaaaaaacgaactgtcattatggacacattgcgcagagggagtaaaccttgg |
39291254 |
T |
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