View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_8 (Length: 648)
Name: NF18317_high_8
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_8 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 34748983 - 34748352
Alignment:
| Q |
1 |
gttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataaatattatttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34748983 |
gttgaaatgattgattgattagaaatgaggcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataaggtaaatattatttaa |
34748884 |
T |
|
| Q |
101 |
ataaactaattatctaacactttattccaataacaaaataaagacactttcgttgcatcgtaacactacnnnnnnnnngacatttgggaccacagatttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
34748883 |
ataaactaattatctaacactttattcctataataaaataaagacactttcgttacatcgtaacactacaaaaaaaaagacatttgggaccacggatttt |
34748784 |
T |
|
| Q |
201 |
tcatttcttaagtcaaaattattataaatcattcattcnnnnnnnncttttctcgtgcacgcacgaaagaaattgacggaactttgtcccgtgaacgatc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
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| T |
34748783 |
tcatttcttaagtcaaaattattataaatcattcattcttttttttcttttctcgtgcacgcacgaaagaaattggcggaactttatctcgtgaacgatc |
34748684 |
T |
|
| Q |
301 |
----attgatggagatacatttgatatgagtttgcaattgatgtcaatgatttcaatgtatgctaaa-agaattagtcaatatactcatttgcatttgat |
395 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34748683 |
gatcattgatgga--tacatttgatatgagtttgcaattcatgtcaatgatttcaaagtatgctaaagagaattagtcaatatactcatttgcatttgat |
34748586 |
T |
|
| Q |
396 |
tgttataaactgatagtggtgaatcaaacttaaaatgtagtgtttccacacacattttaaaatttattcatgcaaccatcgtcatgttcattatcatcat |
495 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34748585 |
tgttataaactgatagtggtgaatcaaacttaaaacgtagtgtttccacacacattttaaaatttattcatgcaaccattgtcatgttcattatcatcat |
34748486 |
T |
|
| Q |
496 |
gttcttcttgtttaagatatatgcagcggttccccaacacaagatttaagagacgtggtcttgttgataactgatactaataaaaagattgttactc-aa |
594 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
34748485 |
gttcttcttgtttaag--atatgcagcggttccccaacacaagatttaagagacgtggtcttgttgataactgatactaataaaaagattattactcaaa |
34748388 |
T |
|
| Q |
595 |
ttcaagtgcaacatgagcaactctttgtttacgaaa |
630 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||| |
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| T |
34748387 |
ttcaagtgcaacgtgagcaaccctttgtttacgaaa |
34748352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38464287 - 38464153
Alignment:
| Q |
1 |
gttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataaatattattt-a |
99 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||| | |
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| T |
38464287 |
gttgaaat-attgattgatttcaaatgaggcacaaggccaagtttaaatacaaccctcgaggctaaaagattaaaatgacacaagctaaatgttatttaa |
38464189 |
T |
|
| Q |
100 |
aataaactaattatctaacactttattccaataaca |
135 |
Q |
| |
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|||||||||||||| |||| || ||||| |||||| |
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| T |
38464188 |
aataaactaattatgtaacgctaaattcctataaca |
38464153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 38450436 - 38450309
Alignment:
| Q |
1 |
gttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataaatattattt-a |
99 |
Q |
| |
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|||||||| ||||||||||| |||||| ||||| |||| |||||||||||| |||| ||| |||||||||||||| ||||| | ||||| |||||| | |
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| T |
38450436 |
gttgaaat-attgattgatttcaaatgaggcacaatgtcatgtttaaatacaatcctcgaggttaaaagagtaaaataacatacggtaaatgttatttaa |
38450338 |
T |
|
| Q |
100 |
aataaactaattatctaacactttattcc |
128 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |
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|
| T |
38450337 |
aataaattaattatctaacgctttattcc |
38450309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 6646752 - 6646804
Alignment:
| Q |
23 |
aaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaa |
76 |
Q |
| |
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|||||||||||| || ||||||||||||| ||||||||||||||||| |||||| |
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| T |
6646752 |
aaatgaagcacaaggccaagtttaaatac-accctcaaggctaaaagggtaaaa |
6646804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 26371162 - 26371242
Alignment:
| Q |
48 |
atacaaccctcaaggctaaaagagtaaaatgacataagataaatattatttaaataaactaattatctaacactttattcc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||| |
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|
| T |
26371162 |
atacaaccctcaaggctaaaagagtaaaatgacataaggtaaatgctatttaaaataactaaatatctaacactttattcc |
26371242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 20868203 - 20868166
Alignment:
| Q |
43 |
tttaaatacaaccctcaaggctaaaagagtaaaatgac |
80 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
20868203 |
tttaaatacaactatcaaggctaaaagagtaaaatgac |
20868166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 187736 - 187834
Alignment:
| Q |
1 |
gttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataaatattatttaa |
100 |
Q |
| |
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||||||||| || ||||||| |||||| ||||| | ||||||||||||| ||||||||| |||||| |||||||| ||||||| |||||||||||||| |
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| T |
187736 |
gttgaaatgtttaattgattgcaaatgaggcacaagc-caagtttaaatactaccctcaagactaaaa-agtaaaataacataaggtaaatattatttaa |
187833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39624109 - 39624020
Alignment:
| Q |
1 |
gttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataaa |
90 |
Q |
| |
|
||||||||| |||||||||| |||| | | ||| | ||| |||||||||||||||| |||||||| ||||| |||||||||| ||||| |
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|
| T |
39624109 |
gttgaaatgtttgattgatttcaaataaggtacaagaccaattttaaatacaaccctcgaggctaaatgagtataatgacataaaataaa |
39624020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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