View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_80 (Length: 289)
Name: NF18317_high_80
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_80 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 8555149 - 8554876
Alignment:
| Q |
1 |
aatacataatggaaattaagagtccatatattccaactgggctggcagcctatgcatattgagtagcttcaaggtttcatcttttgggaagagagattga |
100 |
Q |
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| T |
8555149 |
aatacataatggaaattaagagtccatatattccaactgggctggcagcctatccatattgagtagcttcaaggtttcatcttttgggaagagagattga |
8555050 |
T |
|
| Q |
101 |
gaagtgtgatctttaggttatacgaagagaaaaggtcggaaagaaagtgtcagaaagtgtgttgctagctatagtcttctccgcgtgttatttatagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8555049 |
gaagtgtgatctttaggttatacgaagagaaaaggtcggaaagaaagtgtcagaaagtgtgttgctagttatagtcttctccgcgtgttatttatagcta |
8554950 |
T |
|
| Q |
201 |
taaaggaagaccaaaaggaggtgaaatccgaggagtttgttagagagtatgttgctagtcttctccttgaatgt |
274 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554949 |
taaaggaagaccaaaaggaggtgcgatccgaggagtttgttagagagtatgttgctagtcttctccttgaatgt |
8554876 |
T |
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