View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_82 (Length: 288)
Name: NF18317_high_82
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_82 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 49558743 - 49559014
Alignment:
| Q |
1 |
ctgctagtaagcaaacggtaaatacttgaagcagtgagaccaaaatcaagcaaaaatttcacatttggtttcatgcgaggatcgctaatggaagtaggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49558743 |
ctgctagtaagcaaacggtaaatacttgaagcagtgagaccaaaatcaagcaaaaatttcacatttggtttcatgcgaggatcgctaatggaagtaggac |
49558842 |
T |
|
| Q |
101 |
aagcgattatagaatgaatagcttttttatcagaggggcagaaacttcttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49558843 |
aagcgattatagaatgaatagcttttttatcagaggggcagaaactccttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaa |
49558942 |
T |
|
| Q |
201 |
acgagggcttctggtgatggcggcaacaatgtcttggggagaagcacctttggaggataaaaattgaatctt |
272 |
Q |
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| T |
49558943 |
acgagggcttctggtgatggcggcaacaatgtcttggggagaagcacctttggagtataaaaattgaatctt |
49559014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 49562906 - 49563119
Alignment:
| Q |
1 |
ctgctagtaagcaaacggtaaatacttgaagcagtgagaccaaaatcaagcaaaaatttcacatttggtttcatgcgaggatcgctaatggaagtaggac |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||| |||| ||||||||| ||||||| ||| |||||||||||| ||| ||||| | || |||| |
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| T |
49562906 |
ctgctagtaagtaaacggtaaatacttgaacgagtgacaccagtatcaagcaagaatttcaaattgggtttcatgcgaccatcactaattgtagcaggaa |
49563005 |
T |
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| Q |
101 |
aagcgattatagaatgaatagcttttttatcagaggggcagaaacttcttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaa |
200 |
Q |
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| T |
49563006 |
atgcaattacacaatcaatagctttcttatcagagggacagaaacttcttaccaattcaaaagtagggataatgtgtttgttgaggcttacacgaaggaa |
49563105 |
T |
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| Q |
201 |
acgagggcttctgg |
214 |
Q |
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||||||| |||||| |
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| T |
49563106 |
acgagggtttctgg |
49563119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 49904524 - 49904257
Alignment:
| Q |
1 |
ctgctagtaagcaaacggtaaatacttgaagcagtgagaccaaaatcaagcaaaaatttcacatttggtttcatgcgaggatcgctaatggaagtaggac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||||||| | ||||| ||| | ||| |||| || | |
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| T |
49904524 |
ctgctagtaagcaaacggtaaatacttgaacgagtgacaccaaaatcaagcaaaaattgaagatttggtttaaagcgagaatcacaaattgaagaggggc |
49904425 |
T |
|
| Q |
101 |
aagcgattatagaatgaatagcttttttatcagaggggcagaaacttcttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaa |
200 |
Q |
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|| ||||| ||| ||||||||| | |||||| || ||||||||||||||||||||||||| |||||| |||| ||||| |||||| || || || |
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| T |
49904424 |
aaatgattactgaagtaatagctttatgatcagaaggacagaaacttcttaccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaa |
49904325 |
T |
|
| Q |
201 |
acgagggcttctggtgatggcggcaacaatgtcttggggagaagcacctttggaggataaaaattgaa |
268 |
Q |
| |
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| ||||||||||| | || |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
49904324 |
attggggcttctggtaacggtggcaacaatgtctttgggagaagcacctttggaggctaaaaattgaa |
49904257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 9445880 - 9445909
Alignment:
| Q |
139 |
cagaaacttcttaccaattcaaaagcaggg |
168 |
Q |
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| T |
9445880 |
cagaaacttcttaccaattcaaaagcaggg |
9445909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 41483504 - 41483541
Alignment:
| Q |
142 |
aaacttcttaccaattcaaaagcagggataatgtgttt |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41483504 |
aaacttcttaccaattcaaaagcagggataatgtgttt |
41483541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 29271627 - 29271656
Alignment:
| Q |
139 |
cagaaacttcttaccaattcaaaagcaggg |
168 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29271627 |
cagaaacttcttaccaattcaaaagcaggg |
29271656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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