View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_high_84 (Length: 279)
Name: NF18317_high_84
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_84 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 24859388 - 24859552
Alignment:
| Q |
104 |
atctgtgaatcaatcaatggaagatatcagacagggaagagaactgagaagtttgaagagttgcacaatgttgttaacggggcaaggaaagagctcactg |
203 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24859388 |
atctgtgaatcaatcagtgggagatatcagacagggaagagaactgagaagtttgaagagttgcacaatgttgttaacggggcaaggaaagagctcaccg |
24859487 |
T |
|
| Q |
204 |
atgtctgtagggtttttcgtaaaaagattgggagtgaatcctctgaacgtttataagattattct |
268 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
24859488 |
atgtctacagggtttttcgtaaaaagattgggagtgaatcctctgaacgttcatcagattattct |
24859552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 35837773 - 35837857
Alignment:
| Q |
19 |
attggatacatagatcaataccataatttttgaattatcgatacattatgttagaacaaccatataatttagttgaccaccatat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
35837773 |
attggatacatagatcaataccataatttttgaattatcgatacattatattagagcaaccatataatttaattgatcaccatat |
35837857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University