View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_high_85 (Length: 277)
Name: NF18317_high_85
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_85 |
 | |
|
| [»] scaffold0108 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 12413825 - 12413716
Alignment:
| Q |
158 |
aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12413825 |
aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttatttatcccccctctcaaggt |
12413726 |
T |
|
| Q |
258 |
tccatctgtg |
267 |
Q |
| |
|
|||||||||| |
|
|
| T |
12413725 |
tccatctgtg |
12413716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 12413956 - 12413890
Alignment:
| Q |
18 |
caaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac |
84 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12413956 |
caaacttttgttgaagggcaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac |
12413890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 18091975 - 18092058
Alignment:
| Q |
181 |
ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct |
264 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
18091975 |
ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctcctttcaaggttccatct |
18092058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 18061898 - 18061981
Alignment:
| Q |
181 |
ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct |
264 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||| |
|
|
| T |
18061898 |
ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctccttttaaggttccatct |
18061981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 20396095 - 20396009
Alignment:
| Q |
181 |
ataccatttttaagtaattcattgatcaaattgttgtagaag---ttgataccttctttgtttatcccccctctcaaggttccatct |
264 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||||||| | |||||||||||||||||| || ||| | |||||||||||| |
|
|
| T |
20396095 |
ataccattgttgagtaactcgttgatcaaattgttgtagaagaagtcgataccttctttgtttatacctccttttaaggttccatct |
20396009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 18123948 - 18124031
Alignment:
| Q |
181 |
ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct |
264 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||||||||| | |||||||||||| |||| || ||| | |||||||||||| |
|
|
| T |
18123948 |
ataccattgttgagtaactcgttgatcaaattgttgtagaactcgataccttctttatttacacctccttttaaggttccatct |
18124031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 15937 - 15843
Alignment:
| Q |
171 |
ggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatctg |
265 |
Q |
| |
|
||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
15937 |
ggtttgatccataccattttcaagtaagtcattgatcaaattgttgtagaagttgatgccttctttgtttatacctcctttcaaggttccatctg |
15843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 16093 - 16036
Alignment:
| Q |
22 |
cttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata |
79 |
Q |
| |
|
|||||| |||||| | || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16093 |
cttttggtgaagggctagtgggtagtcaaaatgcatgatagtcacaaaaggctcaata |
16036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University