View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_86 (Length: 276)
Name: NF18317_high_86
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_86 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 42636479 - 42636730
Alignment:
| Q |
8 |
agatgaactaaacagaacagattattcagtagtgcttatttcagttcataatgatatatttagaaatccaaagacatattgtggcactaatactatcatc |
107 |
Q |
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| T |
42636479 |
agatgaactaaacagaacagattattcaatagtgcttatttcagttcataatgatatatttagaaatccaaggacatattgtggcactaatactatcatc |
42636578 |
T |
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| Q |
108 |
ttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcgtatttacttcaagaatttattgcggactt |
207 |
Q |
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| T |
42636579 |
ttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcggatttacttcaagaatttattgcggaatt |
42636678 |
T |
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| Q |
208 |
tgggataacattgcaggaaatgtgttgtgtctacaaagcacaataaatttag |
259 |
Q |
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| T |
42636679 |
tgggataacattgcaggaaatgtgttgtgtctacaaagcacaataaatttag |
42636730 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 20458532 - 20458569
Alignment:
| Q |
101 |
tatcatcttgcttagataaagattattcaactatttca |
138 |
Q |
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| T |
20458532 |
tatcatcttgcttagataaagatcattcaactatttca |
20458569 |
T |
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