View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_high_9 (Length: 573)
Name: NF18317_high_9
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 37887992 - 37887428
Alignment:
| Q |
1 |
aaagtgaaatattaatatatacataatccacacatcaaaagttacaaacattgaaattagtaactaatctattaaaacacgattcagcaaagaacannnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37887992 |
aaagtgaaatattaatatatacataatccacacatcaaaagttacaaacattgaaattagtaactaatctattaaaacacgattcagcaaagaacaatat |
37887893 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnngttaagacatcattcatcagttatcactttcttctcttgatcatcctggctttaacaggaggcaagggagatgtagctctatataa |
200 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37887892 |
atacatatatat--gttaagatatcattcatcggttatcattttcttctcttgatcatcctggctttaacaggaggcaaaggagatgtagctctatataa |
37887795 |
T |
|
| Q |
201 |
ctcatcaatattaacgtaacgataccttttatttgttcttgcaacgcaactttcagaatctgacaaaacagtagatgatgatacagcatcaccaccggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37887794 |
ctcatcaatattaacgtaacgatacctcttatttgttcttgcaaagcaactttcagaatctgacaaaacagtagatgatgatacaacatcaccaccggaa |
37887695 |
T |
|
| Q |
301 |
tcaaccttgttgtgactcacgctatagctattgctattgctgttgttattgctgttttgatcttcttcgaaatctccgctgctgagttgtacgagaaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37887694 |
tcaaccttgttgtgactcacgctatagctattgcta------ttgttattgctgttttgatcttcttcgaaatctccgctgctgagttgtacgagaaatt |
37887601 |
T |
|
| Q |
401 |
ttgctgcttcgatctccgatagggagagcttaaccggtctcttcttgttcctgcccttttccatgannnnnnnnngagaggaaatgtcttgatcaagaa- |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37887600 |
ttgctgcttcgatctccgatagggagagcttaaccggcctcttcttgttcctgcccttttccatgattttttttt-agaggaaatgtcttgatcaagaat |
37887502 |
T |
|
| Q |
500 |
ttatgtaagatattttactttttcatttatatatacttaaggtaggtcggttatactatggatatttgttttct |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37887501 |
ttatgtaagatattttactttttcatttatatatacttaaggtaggtcggttatactatggatatttgttttct |
37887428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University