View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_90 (Length: 261)
Name: NF18317_high_90
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_90 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 16146513 - 16146280
Alignment:
| Q |
20 |
atcttgacagtcaccagtgcaaattcccatcccaataccacagttaccaggtgatgtcaatccaggtggtggctgatcataagtacaagtgcataagtta |
119 |
Q |
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| T |
16146513 |
atcttgacagtcaccagtgcaaattcccatcccaataccacagttaccaggtggtgtcaatccaggtggtggctgatcataagtacaagtgcataagtta |
16146414 |
T |
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| Q |
120 |
tagtatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattacagtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgc |
219 |
Q |
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| T |
16146413 |
tagaatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattacagtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgc |
16146314 |
T |
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| Q |
220 |
attcaccttctacctgtattaattgccctatgct |
253 |
Q |
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| T |
16146313 |
attcaccttctacctgtattaattgccctatgct |
16146280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 16176866 - 16176633
Alignment:
| Q |
20 |
atcttgacagtcaccagtgcaaattcccatcccaataccacagttaccaggtgatgtcaatccaggtggtggctgatcataagtacaagtgcataagtta |
119 |
Q |
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| T |
16176866 |
atcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgcataagttg |
16176767 |
T |
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| Q |
120 |
tagtatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattacagtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgc |
219 |
Q |
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| T |
16176766 |
tagtatgaacatgatgatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttcttttgcacaactaccaacaatttttgtgc |
16176667 |
T |
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| Q |
220 |
attcaccttctacctgtattaattgccctatgct |
253 |
Q |
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| T |
16176666 |
attcaccttctacctgtattaattgccctgtgct |
16176633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 16155143 - 16154912
Alignment:
| Q |
25 |
gacagtcaccagtgcaaattcccatcccaataccacagttaccag---gtgatgtcaatccaggtggtggctgatcataagtacaagtgcataagttata |
121 |
Q |
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| T |
16155143 |
gacagtcatcagtgcaaattcccatcccaatatcacaatgaccagttggtgatgataatgctggtggtggctgatcataactacaagtgcataagttgta |
16155044 |
T |
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| Q |
122 |
gtatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattacagtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgcat |
221 |
Q |
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| T |
16155043 |
gaatgaacatgaggatcctaaaacagcaacaccttttccatatgcttgacaatgagttgcacaatctatttttgcacaactaccaacaattattgtgcat |
16154944 |
T |
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| Q |
222 |
tcaccttctacctgtattaattgccctatgct |
253 |
Q |
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| T |
16154943 |
tcaccttctacctgtattaattgccctgtgct |
16154912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 16200399 - 16200350
Alignment:
| Q |
100 |
aagtacaagtgcataagttatagtatgaacatgacgatcctaaaacacga |
149 |
Q |
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| T |
16200399 |
aagtacaagtgcataagttgtaaattgcacatgacgatcctaaaacacga |
16200350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 16271231 - 16271179
Alignment:
| Q |
94 |
gatcataagtacaagtgcataagttatagtatgaacatgacgatcctaaaaca |
146 |
Q |
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| T |
16271231 |
gatcaaaagcacaggtgcataagttgtagaatgaacatgaagatcctaaaaca |
16271179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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