View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_1 (Length: 964)
Name: NF18317_low_1
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 345 - 662
Target Start/End: Original strand, 31036698 - 31037022
Alignment:
| Q |
345 |
aaaattacaaagttacttcttataaattcttccacaagataatagtgaaagttgcttgttcatcttggccacttagtcagatattttgtatcatcatgtt |
444 |
Q |
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| T |
31036698 |
aaaattacaaagttacttcttataaattcttccacaagataatagtgaaagttgcttgttcatcttagccacttagtcagaaattttgtattctcacgtt |
31036797 |
T |
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| Q |
445 |
ggagcaatagtagcatctcaaaataatttgggaccaggactcatcaaatgcgtttgatgg-taaggcgttggtgtaaggtctaatggcgggctg------ |
537 |
Q |
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| T |
31036798 |
ggagcaatagtagcatctc-aaacaatttgggaccaggactcatcaaatgcgctggatggcaaaggcgttggcgtatggtctaatggagggccgagggcc |
31036896 |
T |
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| Q |
538 |
-gtgaatggaaaggatcgtacatagagaatgttgtatcgtgtaaaagtatatagagaagccgagacaaagttggattatgtgacattaaggattggtcaa |
636 |
Q |
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| T |
31036897 |
agtgaatggaaaaaatcgtatacagagaaggttgtatcgtgtaaaagtatatagagaagctgagacaaagttggattatttgacattaaggtttggtcaa |
31036996 |
T |
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| Q |
637 |
gtttcttaaagcttgtgtggtgcctt |
662 |
Q |
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| T |
31036997 |
gtttcttaaagcttgtgtggtacctt |
31037022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 126 - 359
Target Start/End: Original strand, 31036449 - 31036681
Alignment:
| Q |
126 |
tcatgaaccattttcttcaaaagttttagcattattcttagatggaataacaagcttattaacgtcatttcaagtacttttcaaatctccaactgtcata |
225 |
Q |
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| T |
31036449 |
tcatgaagcattttctttaagagttgtagcattatttttagatggaataacaagcttattaacatcatttcaagtactatttaaatctccaactgtcgta |
31036548 |
T |
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| Q |
226 |
tgtgacaggttttgcaaaatataattgatcaatctgaacttggcaagaatttgcaaaattgaaggcattcatttaacatacaatataccagctttatgct |
325 |
Q |
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| T |
31036549 |
tgtgatagcttttgcaaaaaataattgatcaatttgaacttggcaacaatttgcaaaa-tgacggcattcatttaacatacaatataacagcttgatact |
31036647 |
T |
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| Q |
326 |
tggcataaccgctcattataaaattacaaagtta |
359 |
Q |
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| T |
31036648 |
tgacataaccgttcattataaaattacaaagtta |
31036681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 31032670 - 31032770
Alignment:
| Q |
25 |
ccaaagcttgaaataatttaccaaattaagctctcatgtcatcaagcaatttgactaataaatatgaatcatgaactatgccaacatgaattccgaattg |
124 |
Q |
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| T |
31032670 |
ccaaagcttgaaataatttaccaaattaagctttcatgtcgtcaagcaatttggccaataaacatgaatcttgaactatgccaacatgaattccgaattg |
31032769 |
T |
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| Q |
125 |
g |
125 |
Q |
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| T |
31032770 |
g |
31032770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 31022768 - 31022878
Alignment:
| Q |
15 |
agtttgaccaccaaagcttgaaataatttaccaaattaagctctcatgtcatcaagcaatttgactaataaatatgaatcatgaactatgccaacatgaa |
114 |
Q |
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| T |
31022768 |
agtttgagcaccaaagcttgaaacaatttaccaaattaagctctcatgtcatcatgcaatttgaccaataaacatgaatcttgaaccatgccaacatgaa |
31022867 |
T |
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| Q |
115 |
ttccgaattgg |
125 |
Q |
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| T |
31022868 |
taccaaattgg |
31022878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 838 - 896
Target Start/End: Original strand, 31037093 - 31037151
Alignment:
| Q |
838 |
attcctttttgaacattctcactcagctctattttcttccttcttaaagataactatac |
896 |
Q |
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| T |
31037093 |
attcctttttgaacattctctctcagctctattttcttccttcttaaagataacaatac |
31037151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 691 - 761
Target Start/End: Original strand, 31074219 - 31074289
Alignment:
| Q |
691 |
aacattagacaaccgaagtatttcgagcactagtattgaaattgaatcaagtttcttttgagcatacatca |
761 |
Q |
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| T |
31074219 |
aacattagagaatcgaattattttgagcattggtattgaaattaaattaagtttcttttgagcacacatca |
31074289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 18430328 - 18430251
Alignment:
| Q |
47 |
aaattaagctctcatgtcatcaagcaatttgactaataaatatgaatcatgaactatgccaacatgaattccgaattg |
124 |
Q |
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| T |
18430328 |
aaattaagctctcatgtcatcaagcaattttaccaataagcatgaatcttgaaatatgccaacttgaaatccaaattg |
18430251 |
T |
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