View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_102 (Length: 245)
Name: NF18317_low_102
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_102 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 55320154 - 55320377
Alignment:
| Q |
8 |
tagcaaaggcaagtggacatgaaaagcaacctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttgtgattacatgcaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
55320154 |
tagcaaaggcaagtggacatgaaaagcaacctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccctgtgattccatgcaaa |
55320253 |
T |
|
| Q |
108 |
taactgctccaacaatcattcacaggaggaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55320254 |
taactgctccaacaatcattcacaggacgaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaa |
55320353 |
T |
|
| Q |
208 |
catgccttgcaattatgttgaatg |
231 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
55320354 |
catgccttgcaattctgttgaatg |
55320377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 31951279 - 31951474
Alignment:
| Q |
36 |
acctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttgtgattacatgcaaataactgctccaacaatcattcacaggag |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31951279 |
acctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttatgattccatgcaaataactgctccaacaatcattcacaggag |
31951378 |
T |
|
| Q |
136 |
gaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaacatgccttgcaattatgttgaatg |
231 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31951379 |
gaaccaaatctatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaacatgccttgcaattctgttgaatg |
31951474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 2778252 - 2778033
Alignment:
| Q |
12 |
aaaggcaagtggacatgaaaagcaacctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttgtgattacatgcaaataac |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||| |||||||||||| |
|
|
| T |
2778252 |
aaaggcaagtggacatgaaaagcagcctcgccataaaaatagaaccaaaaggcacaaacgcaacactgtaaattataccttgtgattccatgcaaataac |
2778153 |
T |
|
| Q |
112 |
tgctccaacaatcattcacaggaggaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaacatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2778152 |
tgctccaacaatcattcacaggaggatacaaaactatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgtcatgaaattaacaaaacatg |
2778053 |
T |
|
| Q |
212 |
ccttgcaattatgttgaatg |
231 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
2778052 |
ccttgcaattctgttgaatg |
2778033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University