View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_103 (Length: 245)
Name: NF18317_low_103
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_103 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 12152756 - 12152864
Alignment:
| Q |
120 |
aaaacaatcc-taaaagatcaaatgtttttggttttagtccctgacgttaaa-gtatgttaaaaacgcatgatgtggtttaatgtggcatttgaagcact |
217 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12152756 |
aaaacaatccctaaaagatcaaatatttttggttttagtccttgacgttaaaagtatgttaaaaacgcatgatgtggtttaatgtggcatttgaagcact |
12152855 |
T |
|
| Q |
218 |
ttctttgaa |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
12152856 |
ttctttgaa |
12152864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 12152689 - 12152728
Alignment:
| Q |
55 |
atgtagttagttcttgtaatttagtgagtgtttagttttc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12152689 |
atgtagttagttcttgtaatttagtgagtgtttagttttc |
12152728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 11182895 - 11182858
Alignment:
| Q |
189 |
atgtggtttaatgtggcatttgaagcactttctttgaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11182895 |
atgtggtttaatgtggcatttgaagcagtttctttgaa |
11182858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 2318095 - 2318048
Alignment:
| Q |
115 |
gtttgaaaacaatc-ctaaaagatcaaatgtttttggttttagtccct |
161 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
2318095 |
gtttgaaaacaaacactaaaagatcaaatgtttttggttttggtccct |
2318048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 23088852 - 23088817
Alignment:
| Q |
191 |
gtggtttaatgtggcatttgaagcactttctttgaa |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23088852 |
gtggtttaatgtggtatttgaagcactttctttgaa |
23088817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University