View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_104 (Length: 245)
Name: NF18317_low_104
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_104 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2369591 - 2369346
Alignment:
| Q |
1 |
aatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagacaagctgttg |
100 |
Q |
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| T |
2369591 |
aatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagacaagctgttg |
2369492 |
T |
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| Q |
101 |
caaattaattgaattcactgctcataatacaaattaatcacaattatgatt-aaaagttgatacaagaaaccaagatgagagatgagattgtgataagaa |
199 |
Q |
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| T |
2369491 |
caaattaattgaattcaatgctcataatacaaattaatcacaattatgattaaaaagttgatacaagaaaccaagatgagagatgagattgtgataagaa |
2369392 |
T |
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| Q |
200 |
agagatgaggagcagcatcgttcatgattcctcttaaaataacatt |
245 |
Q |
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| T |
2369391 |
agagatgaggagcagcatcgttcatgattcctcttaaaataacatt |
2369346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 36698053 - 36697961
Alignment:
| Q |
152 |
aaaagttgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacat |
244 |
Q |
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| T |
36698053 |
aaaaattgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcaacatcgttcatgattcctcttaaaataacat |
36697961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 20104701 - 20104632
Alignment:
| Q |
175 |
atgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacat |
244 |
Q |
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| T |
20104701 |
atgagagatgtcattgtgataagaaagagacgaggagcagcatcctccatgattcttcttaaaataacat |
20104632 |
T |
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