View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_105 (Length: 241)
Name: NF18317_low_105
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_105 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 47658048 - 47658288
Alignment:
| Q |
1 |
tttgtggagtttatgttgtggagaatatcagaaggtttgaaaaggggtgttaacaaggttcatgacgacgttgtagacaaaggaatgcaagttgttagat |
100 |
Q |
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| T |
47658048 |
tttgtggagtttatgttgtggagaatatcagaaggtttgaaaaggggtgttaacaaggttcatgacgacgttgtagacaaaggaatgcaagttgttagat |
47658147 |
T |
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| Q |
101 |
atgtaggagctaagtcgtcggttattattaccttgtgtcttgctttatatttacatattttgggtggtagtaggattctagtggctgcttagcatgatca |
200 |
Q |
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| T |
47658148 |
atgtaggagctaagtcgtcggttattattaccttgtgtcttgctttatatttacatattttgggtggtagtaggattctagtggctgcttagcatgatca |
47658247 |
T |
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| Q |
201 |
ttcatcctaccctcatacttgtaatgcagttggagtataat |
241 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
47658248 |
ttcatcctaccctcatacttgtaatgcagttggaatataat |
47658288 |
T |
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