View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_106 (Length: 239)
Name: NF18317_low_106
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31140246 - 31140474
Alignment:
| Q |
1 |
tgcacaatcctactaacaaatgaaa-ataagagatctagaaattcaacaattcaa--caaaatatgacaatttcaaactggctgagctcattccttaact |
97 |
Q |
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| T |
31140246 |
tgcacaatcctactaacaaatgaaagataagagatctagaaattcaacaattcaaatcaaaatatgacaatttcaaactggctgagctcattccttaact |
31140345 |
T |
|
| Q |
98 |
c--aaatgacttaattagagtctgtctctgagatatgttatacatagattaagaattacaaatttaaatnnnnnnnnnnnnnctcctattttttccaaca |
195 |
Q |
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| T |
31140346 |
ctaaaatgacttgattagagtctgtctctgagatatgttatacatagattaagaattacaaatttaaataaaaaaataaaaactcctattttttccaaca |
31140445 |
T |
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| Q |
196 |
actgacagtgtaataacatatggtaattg |
224 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31140446 |
actgacagtgtaataacatatggtaattg |
31140474 |
T |
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