View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_108 (Length: 238)

Name: NF18317_low_108
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_108
NF18317_low_108
[»] chr8 (5 HSPs)
chr8 (21-203)||(39851961-39852145)
chr8 (29-101)||(31265063-31265137)
chr8 (101-154)||(39851921-39851974)
chr8 (29-91)||(25280004-25280067)
chr8 (53-91)||(1502662-1502700)
[»] chr7 (2 HSPs)
chr7 (31-101)||(40998350-40998422)
chr7 (55-91)||(35875161-35875197)
[»] chr4 (2 HSPs)
chr4 (58-103)||(30978640-30978685)
chr4 (52-101)||(2063541-2063590)
[»] chr1 (3 HSPs)
chr1 (31-101)||(46592437-46592509)
chr1 (30-84)||(21304323-21304379)
chr1 (51-91)||(35438019-35438059)
[»] chr2 (3 HSPs)
chr2 (29-101)||(35317886-35317961)
chr2 (29-101)||(18684428-18684502)
chr2 (53-103)||(13538460-13538510)
[»] chr5 (1 HSPs)
chr5 (29-101)||(25437839-25437914)
[»] chr3 (2 HSPs)
chr3 (29-91)||(46547747-46547810)
chr3 (29-101)||(54290744-54290817)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 39851961 - 39852145
Alignment:
Q  21 tgtacaaaggaaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaactttttatgaaaagttgtctattcatccatcttataggga 118  Q
    ||||||| |||||||||||||||||||  |||  ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||| |    
T  39851961 tgtacaagggaaatgttaacgagtgctttcggggcactctttaagggtttaaagtagtaactttttatgaaaagttgtgtattcatccatcttacaggaa 39852060  T
Q  119 tttgaatgaaacgtgtatcatttgtacaagggaaatacctcttttatacaattgtttatcataacatatacaagggcaatacctc 203  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39852061 tttgaatgaaacgtgtatcatttgtacaagagaaatacctcttttgtacaattgtttatcataacatatacaagggcaatacctc 39852145  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 31265137 - 31265063
Alignment:
Q  29 ggaaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||| |||| ||||    
T  31265137 ggaaatgttaacgagtgctcccggggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatt 31265063  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 39851921 - 39851974
Alignment:
Q  101 tcatccatcttatagggatttgaatgaaacgtgtatcatttgtacaagggaaat 154  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  39851921 tcatccatcgtacagggatttgaatgaaacgtgtataatttgtacaagggaaat 39851974  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 25280067 - 25280004
Alignment:
Q  29 ggaaatgttaacgagtgctcccgg-cactctttaagagtctaaagtagtaactttttatgaaaa 91  Q
    |||||||||||||||||| || || ||||||||||||| ||||| |||||| ||||||||||||    
T  25280067 ggaaatgttaacgagtgcccctgggcactctttaagagcctaaaatagtaaatttttatgaaaa 25280004  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 1502662 - 1502700
Alignment:
Q  53 cactctttaagagtctaaagtagtaactttttatgaaaa 91  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  1502662 cactctttaagagtctaaagtagtaattttttatgaaaa 1502700  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 40998350 - 40998422
Alignment:
Q  31 aaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    ||||||| ||||||||| ||||  ||||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  40998350 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaactttttatgaaaatttgtgtatt 40998422  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 35875197 - 35875161
Alignment:
Q  55 ctctttaagagtctaaagtagtaactttttatgaaaa 91  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35875197 ctctttaagagtctcaagtagtaactttttatgaaaa 35875161  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 30978640 - 30978685
Alignment:
Q  58 tttaagagtctaaagtagtaactttttatgaaaagttgtctattca 103  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  30978640 tttaagggtctaaagtagtaactttttatgaaaagttgtgtattca 30978685  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 2063590 - 2063541
Alignment:
Q  52 gcactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    |||||||||||||| ||| | ||||||||||||||||||| |||| ||||    
T  2063590 gcactctttaagagcctagaatagtaactttttatgaaaatttgtgtatt 2063541  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 46592437 - 46592509
Alignment:
Q  31 aaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    |||||||||||||||  |||||  ||||||||||||| ||| | ||||||||||||||||||| |||||||||    
T  46592437 aaatgttaacgagtgtccccggagcactctttaagagcctagaatagtaactttttatgaaaacttgtctatt 46592509  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 21304323 - 21304379
Alignment:
Q  30 gaaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaacttttt 84  Q
    ||||||||||||||||| ||||   ||||||||||||||||| | ||||||||||||    
T  21304323 gaaatgttaacgagtgcccccgagacactctttaagagtctagaatagtaacttttt 21304379  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 35438019 - 35438059
Alignment:
Q  51 ggcactctttaagagtctaaagtagtaactttttatgaaaa 91  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  35438019 ggcactctttaagagtttaaagtagtgagtttttatgaaaa 35438059  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 35317961 - 35317886
Alignment:
Q  29 ggaaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaac-tttttatgaaaagttgtctatt 101  Q
    |||||||||||||||||| ||||   |||||||||||||||||||||| |||| |||||||||||| |||| ||||    
T  35317961 ggaaatgttaacgagtgcacccgagacactctttaagagtctaaagtaataacttttttatgaaaatttgtgtatt 35317886  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 18684502 - 18684428
Alignment:
Q  29 ggaaatgttaacgagtgctcccgg--cactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    |||||||||||||||||||||| |  ||||||||||||| ||| | || |||||||||||||||| |||| ||||    
T  18684502 ggaaatgttaacgagtgctccctggacactctttaagagcctagaataataactttttatgaaaatttgtgtatt 18684428  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 13538510 - 13538460
Alignment:
Q  53 cactctttaagagtctaaagtagtaactttttatgaaaagttgtctattca 103  Q
    ||||||||||| |||| || |||||||||||||||||||||| | ||||||    
T  13538510 cactctttaagggtcttaaatagtaactttttatgaaaagttatgtattca 13538460  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 25437839 - 25437914
Alignment:
Q  29 ggaaatgttaacgagtgctcccgg---cactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    |||||||||||||||||| ||| |   ||||||||||||| ||| | ||||||||||||||||||| |||| ||||    
T  25437839 ggaaatgttaacgagtgccccccggcacactctttaagagcctagaatagtaactttttatgaaaacttgtgtatt 25437914  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 46547747 - 46547810
Alignment:
Q  29 ggaaatgttaacgagtgctcccgg-cactctttaagagtctaaagtagtaactttttatgaaaa 91  Q
    ||||||||||||||||| |||||| ||||||||||| |||| |  |||||| ||||||||||||    
T  46547747 ggaaatgttaacgagtgttcccggacactctttaagggtcttatatagtaattttttatgaaaa 46547810  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 54290744 - 54290817
Alignment:
Q  29 ggaaatgttaacgagtgctccc-ggcactctttaagagtctaaagtagtaactttttatgaaaagttgtctatt 101  Q
    |||||||||||||||||| ||  || |||||||||||| ||||| || || ||||||||||||| |||| ||||    
T  54290744 ggaaatgttaacgagtgccccgaggtactctttaagagcctaaaataatatctttttatgaaaacttgtgtatt 54290817  T

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