View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_119 (Length: 226)

Name: NF18317_low_119
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_119
NF18317_low_119
[»] chr2 (3 HSPs)
chr2 (124-219)||(11719733-11719828)
chr2 (1-100)||(11719853-11719952)
chr2 (1-83)||(11728986-11729068)
[»] chr1 (1 HSPs)
chr1 (126-188)||(7661743-7661805)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 11719828 - 11719733
Alignment:
Q  124 cttcatgtgatattaattaaaaaaggtttgatgtatttcccttatttttgtagttgttccatctcccatcttcaattgttccctttcacattttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11719828 cttcatgtgatattaattaaaaaaggtttgatgtatttcccttatttttgtagttgttccatctcccatcttcaattgttccctttcacattttgt 11719733  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11719952 - 11719853
Alignment:
Q  1 ttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttattatcattcatttgattctttcctaaaagtgtgggtatctaccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11719952 ttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttattatcattcatttgattctttcctaaaagtgtgggcatctaccg 11719853  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11729068 - 11728986
Alignment:
Q  1 ttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttattatcattcatttgattctttcctaaa 83  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  11729068 ttttgtttgtttgtatgtttcatttgttggtcttccttatttcctatggtattttattatcattcatttgattctttcctaaa 11728986  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 7661805 - 7661743
Alignment:
Q  126 tcatgtgatattaattaaaaaaggtttgatgtatttcccttatttttgtagttgttccatctc 188  Q
    |||||| ||| | |||||||||| ||||| | ||||||||||| ||||||||| |||||||||    
T  7661805 tcatgtaatactgattaaaaaagatttgaagcatttcccttatatttgtagttattccatctc 7661743  T

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