View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_12 (Length: 545)
Name: NF18317_low_12
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 872875 - 872529
Alignment:
| Q |
20 |
gaccactattgcaaaaaaggaaaatggtgcatattaattattcaatcgataaataaatacccacttaactgaaaatgtaaatcgtagcatgcagactcca |
119 |
Q |
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| T |
872875 |
gaccactattgcaaacaaggaaaatggtgcatattaattattcaatcgataaata----cccacttaactgaaaatgtaaatcgtagcatgcagactcca |
872780 |
T |
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| Q |
120 |
aagttccta----------gatg--------taaagtaagatcaatcctataatgcctttgaataaactcaaaaaactgtgaaatcaagaattttgaaga |
201 |
Q |
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| T |
872779 |
aagttcctatgatgcctatgatgcctttgaataaactaagatcaatcctatgatgcctttgaataaactcaaaaaactgtgaaatcaagaattttgaaga |
872680 |
T |
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| Q |
202 |
atattataatgaaaaaatgacagacaaaaattatattttacaaatcaaaattattactagttttgtggtatatttatcacaaaatcttctgatttgaaga |
301 |
Q |
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| T |
872679 |
atattataatgaaaaaatgacagacaaaaattatattttacaaatcaaaattattactagtttcgtggtatatttatcacaaaatcttctgatttgaaga |
872580 |
T |
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| Q |
302 |
attcatcgtagtctttgcgttggaaaataaacaacttttttccatggtaat |
352 |
Q |
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| T |
872579 |
attcatcgtagtgtttgcgttggaaaataaacaacttttttccatggtaat |
872529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 426 - 531
Target Start/End: Complemental strand, 872482 - 872377
Alignment:
| Q |
426 |
ttgaggatattttcaaactcttaacaatcaaattttggtcaacaccgtgattgaaaaccatgaagccttgcgtcatgcatgtttcccttacaatgtccag |
525 |
Q |
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| T |
872482 |
ttgaggatattttcaaactcttaacaatcaaattttggtcaacaccgtgattgaaaaccatgaagccttgcgtcatgcatgtttcccttacaatgtccag |
872383 |
T |
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| Q |
526 |
aataat |
531 |
Q |
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| T |
872382 |
agtaat |
872377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 872529 - 872499
Alignment:
| Q |
397 |
tagcccatggaggccttatagaaccaacttt |
427 |
Q |
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| T |
872529 |
tagcccatggaggccttatagaaccaacttt |
872499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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