View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_129 (Length: 208)
Name: NF18317_low_129
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_129 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 2047437 - 2047267
Alignment:
| Q |
20 |
aggagttggctacaatattttataaatcaacaatataatacccaattgagttgttgcaaaaatttgataccagacaccaatcttcatcatatagtacagc |
119 |
Q |
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| T |
2047437 |
aggagttggctacaatattttataaatcaacaatataatacccaattgaattgttgcaaaaatttaataccagacaccaatcttcatcatatagtacagc |
2047338 |
T |
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| Q |
120 |
tcctgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggttacaaaaacgctgcaaat |
190 |
Q |
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| T |
2047337 |
tcctgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggttacaaaaacgctgcaaat |
2047267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 2062476 - 2062360
Alignment:
| Q |
74 |
tgcaaaaatttgataccagacaccaatcttcatcatatagtacagctcctgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggtt |
173 |
Q |
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| T |
2062476 |
tgcataaatttgataccagtctcccatcttccgcatacagaacagctcctgcaccagctggtccaggatttccacctgatgcaccatcaaaccgaacgat |
2062377 |
T |
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| Q |
174 |
acaaaaacgctgcaaat |
190 |
Q |
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| T |
2062376 |
acacaaaccctgcaaat |
2062360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 2053990 - 2053823
Alignment:
| Q |
28 |
gctacaatattttataaatcaacaatataatac-----ccaattgagttgttgcaaaaatttgataccagacaccaatcttcatcatatagtacagctcc |
122 |
Q |
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| T |
2053990 |
gctacaatattttataaatcaaaaatataaaattaaaaccaattgaactgttgaataaatttgataccggtctcccatcttccgcatacagaatagctcc |
2053891 |
T |
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| Q |
123 |
tgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggttacaaaaacgctgcaaat |
190 |
Q |
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| T |
2053890 |
tgcaccagctggtccaggatttccaatcgatgcaccatcaaactcgaggatacaagaacgctacaaat |
2053823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 190
Target Start/End: Complemental strand, 2106338 - 2106199
Alignment:
| Q |
51 |
aatataatacccaattgagttgttgcaaaaatttgataccagacaccaatcttcatcatatagtacagctcctgcaccagctggtcccggattcccactt |
150 |
Q |
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| T |
2106338 |
aatataatgtccaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccactg |
2106239 |
T |
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| Q |
151 |
gatgcaccatcaaacataaggttacaaaaacgctgcaaat |
190 |
Q |
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| T |
2106238 |
gctgcaccatcaaactcaaggatacaagaaagctgcaaat |
2106199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 2097790 - 2097712
Alignment:
| Q |
112 |
agtacagctcctgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggttacaaaaacgctgcaaat |
190 |
Q |
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| T |
2097790 |
agtatagctccggcaccagctggtccgggattcccgctggctgcaccatcaaactcaaggatacaagaaagctgcaaat |
2097712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 2041866 - 2041739
Alignment:
| Q |
63 |
aattgagttgttgcaaaaatttgataccagacaccaatcttcatcatatagtacagctcctgcaccagctggtcccggattcccacttgatgcaccatca |
162 |
Q |
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| T |
2041866 |
aattgaattgttgtataaacttgataccagacttccattttcaacaaacaatatagctcttgcaccagctgatccaggatttccacttgacgcaccatca |
2041767 |
T |
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| Q |
163 |
aacataaggttacaaaaacgctgcaaat |
190 |
Q |
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| T |
2041766 |
aattgaaggatacaagaactctgcaaat |
2041739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 2088243 - 2088190
Alignment:
| Q |
112 |
agtacagctcctgcaccagctggtcccggattcccacttgatgcaccatcaaac |
165 |
Q |
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| T |
2088243 |
agtatagctcctgcaccagctggtccgggatttccacgcgatgcgccatcaaac |
2088190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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