View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_130 (Length: 204)

Name: NF18317_low_130
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_130
NF18317_low_130
[»] chr4 (8 HSPs)
chr4 (20-188)||(4845654-4845822)
chr4 (20-188)||(5193463-5193631)
chr4 (97-188)||(5178968-5179059)
chr4 (96-188)||(5141770-5141862)
chr4 (41-118)||(5170870-5170947)
chr4 (41-125)||(5180347-5180431)
chr4 (41-125)||(5154393-5154476)
chr4 (83-134)||(5170940-5170991)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 4845822 - 4845654
Alignment:
Q  20 tatccatcaatttggtctctctaagataatctcagatactgattaatactatgaaagtgtttataattttacgatgattttataaattctttaattttag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845822 tatccatcaatttggtctctctaagataatctcagatactgattaatactatgaaagtgtttataattttacgatgattttataaattctttaattttag 4845723  T
Q  120 gatcgagctctgtaannnnnnnggccaattgagtaattaatttttctattttgttgttctctttcattt 188  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  4845722 gatcgagctctgtaatttttttggccaattgagtaattaatttttctattttgttgttctctttcattt 4845654  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 5193463 - 5193631
Alignment:
Q  20 tatccatcaatttggtctctctaagataatctcagatactgattaatactatgaaagtgtttataattttacgatgattttataaattctttaattttag 119  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5193463 tatccatcaatttggtctctctaagatagtctcagatactaattaaaactatgaaagtgtttataattttacgatgattttataaattctttaattttag 5193562  T
Q  120 gatcgagctctgtaannnnnnnggccaattgagtaattaatttttctattttgttgttctctttcattt 188  Q
    |||||||||||||||       |||||||||||  ||||||||||||||||| ||||||||||||||||    
T  5193563 gatcgagctctgtaattttttaggccaattgagggattaatttttctattttattgttctctttcattt 5193631  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 5178968 - 5179059
Alignment:
Q  97 ttttataaattctttaattttaggatcgagctctgtaannnnnnnggccaattgagtaattaatttttctattttgttgttctctttcattt 188  Q
    ||||||| ||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5178968 ttttatacattctttaattttaggatcgagctctgtaattttttaggccaattgagtgattaatttttctattttattgttctctttcattt 5179059  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 5141770 - 5141862
Alignment:
Q  96 attttataaattctttaattttaggatcgagctctgtaannnnnnnggccaattgagtaattaatttttctattttgttgttctctttcattt 188  Q
    |||||||| ||||||||||||||||||||| ||||||||       |||||||| | | ||||| ||||||||||||||||||||||||||||    
T  5141770 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattaaatgattaagttttctattttgttgttctctttcattt 5141862  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 5170870 - 5170947
Alignment:
Q  41 taagataatctcagatactgattaatactatgaaagtgtttataattttacgatgattttataaattctttaatttta 118  Q
    ||||||| ||||||||| ||||| ||||||||||||||||| ||||||||  ||||||| || |||||||||||||||    
T  5170870 taagatagtctcagatattgattgatactatgaaagtgtttttaattttataatgatttcattaattctttaatttta 5170947  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 5180347 - 5180431
Alignment:
Q  41 taagataatctcagatactgattaatactatgaaagtgtttataattttacgatgattttataaattctttaattttaggatcga 125  Q
    ||||||| ||||||||| ||||| |||| | |||||| ||| ||||||||  ||||||| |||||||||||||||||||||||||    
T  5180347 taagatagtctcagatattgattgatacaaggaaagtatttttaattttataatgatttcataaattctttaattttaggatcga 5180431  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 5154393 - 5154476
Alignment:
Q  41 taagataatctcagatactgattaatactatgaaagtgtttataattttacgatgattttataaattctttaattttaggatcga 125  Q
    ||||||| | ||||||| ||||| |||||| ||| || ||| ||||||||  ||||||| |||||||||||||||||||||||||    
T  5154393 taagatagtttcagatattgattgatactaggaa-gtatttttaattttataatgatttcataaattctttaattttaggatcga 5154476  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 5170940 - 5170991
Alignment:
Q  83 taattttacgatgattttataaattctttaattttaggatcgagctctgtaa 134  Q
    ||||||||  ||||||| ||||||||||||||||||||||||| || |||||    
T  5170940 taattttataatgatttcataaattctttaattttaggatcgacctatgtaa 5170991  T

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