View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_14 (Length: 534)

Name: NF18317_low_14
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_14
NF18317_low_14
[»] chr4 (15 HSPs)
chr4 (11-490)||(48818106-48818586)
chr4 (359-487)||(27574562-27574689)
chr4 (359-488)||(6942451-6942580)
chr4 (389-455)||(33977801-33977867)
chr4 (396-485)||(19594460-19594549)
chr4 (385-455)||(40293582-40293652)
chr4 (389-455)||(7162239-7162305)
chr4 (397-461)||(6942259-6942323)
chr4 (365-455)||(2720536-2720625)
chr4 (353-455)||(39835705-39835807)
chr4 (397-449)||(2075190-2075242)
chr4 (397-461)||(17354488-17354552)
chr4 (362-428)||(29431829-29431895)
chr4 (369-455)||(54612611-54612696)
chr4 (11-109)||(48792555-48792650)
[»] chr3 (14 HSPs)
chr3 (370-463)||(34819734-34819827)
chr3 (359-488)||(33967912-33968041)
chr3 (359-454)||(33640956-33641051)
chr3 (359-449)||(50302985-50303075)
chr3 (366-490)||(51390310-51390433)
chr3 (366-489)||(50164021-50164144)
chr3 (381-490)||(12790089-12790198)
chr3 (354-455)||(55406888-55406989)
chr3 (359-461)||(28958582-28958683)
chr3 (370-460)||(47068885-47068975)
chr3 (360-461)||(52247425-52247526)
chr3 (370-485)||(14998767-14998881)
chr3 (359-461)||(21758269-21758370)
chr3 (353-450)||(28309469-28309565)
[»] chr1 (22 HSPs)
chr1 (366-490)||(36438395-36438519)
chr1 (370-455)||(47949995-47950080)
chr1 (359-464)||(21008199-21008304)
chr1 (370-455)||(50075600-50075685)
chr1 (366-486)||(11908550-11908670)
chr1 (359-485)||(12570080-12570206)
chr1 (359-479)||(14149452-14149571)
chr1 (370-450)||(47445989-47446069)
chr1 (359-446)||(13383047-13383134)
chr1 (353-455)||(24439128-24439230)
chr1 (360-461)||(35652482-35652583)
chr1 (370-490)||(47176746-47176867)
chr1 (353-455)||(7789449-7789550)
chr1 (371-455)||(46288800-46288884)
chr1 (406-479)||(47449226-47449299)
chr1 (385-445)||(30321998-30322058)
chr1 (366-453)||(18033646-18033733)
chr1 (389-479)||(34967700-34967790)
chr1 (360-461)||(10987198-10987299)
chr1 (402-485)||(8890676-8890760)
chr1 (397-449)||(10101246-10101298)
chr1 (388-444)||(19439420-19439476)
[»] chr7 (7 HSPs)
chr7 (359-489)||(2457927-2458057)
chr7 (362-490)||(23031748-23031875)
chr7 (388-463)||(3399226-3399301)
chr7 (399-486)||(36783278-36783365)
chr7 (353-490)||(32546443-32546580)
chr7 (366-455)||(32650065-32650154)
chr7 (353-440)||(44599389-44599476)
[»] chr2 (20 HSPs)
chr2 (369-454)||(28226187-28226272)
chr2 (370-485)||(43664816-43664931)
chr2 (369-487)||(11252583-11252701)
chr2 (397-490)||(43592736-43592829)
chr2 (366-485)||(35813764-35813884)
chr2 (370-453)||(8335244-8335327)
chr2 (383-445)||(13915887-13915950)
chr2 (397-488)||(30560935-30561026)
chr2 (360-443)||(39958842-39958925)
chr2 (391-461)||(9707121-9707191)
chr2 (353-489)||(1687928-1688062)
chr2 (397-461)||(7721621-7721685)
chr2 (359-462)||(4283430-4283533)
chr2 (359-454)||(5578018-5578113)
chr2 (359-449)||(9886853-9886944)
chr2 (366-444)||(33434259-33434337)
chr2 (354-414)||(1662340-1662400)
chr2 (359-411)||(32839090-32839142)
chr2 (371-427)||(33440856-33440912)
chr2 (422-490)||(33441824-33441892)
[»] chr8 (9 HSPs)
chr8 (359-490)||(12398067-12398198)
chr8 (353-460)||(23736932-23737042)
chr8 (385-485)||(33274295-33274395)
chr8 (370-485)||(40330114-40330229)
chr8 (369-490)||(18310518-18310642)
chr8 (369-455)||(12892616-12892702)
chr8 (397-486)||(30928835-30928924)
chr8 (397-449)||(404423-404474)
chr8 (388-454)||(39400958-39401024)
[»] chr5 (13 HSPs)
chr5 (370-490)||(3494461-3494581)
chr5 (370-455)||(12517116-12517201)
chr5 (397-485)||(17904293-17904381)
chr5 (359-455)||(35470083-35470179)
chr5 (353-446)||(41174141-41174234)
chr5 (366-417)||(18393300-18393351)
chr5 (374-441)||(28993886-28993953)
chr5 (370-490)||(5844370-5844490)
chr5 (359-403)||(11935978-11936022)
chr5 (370-486)||(42207049-42207165)
chr5 (399-461)||(35563117-35563179)
chr5 (388-420)||(12453919-12453951)
chr5 (361-449)||(37194001-37194088)
[»] chr6 (2 HSPs)
chr6 (359-485)||(32604515-32604641)
chr6 (397-485)||(1288129-1288217)
[»] scaffold0129 (1 HSPs)
scaffold0129 (392-490)||(37448-37546)
[»] scaffold0172 (1 HSPs)
scaffold0172 (353-417)||(26390-26454)
[»] scaffold0095 (1 HSPs)
scaffold0095 (388-454)||(36478-36544)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Original strand, 48818106 - 48818586
Alignment:
Q  11 cagagaacactgattggaatgagaggagtgtgagtgcagagaaaagaacaagtttcatggtggtggaaaaagccattgtgcgctataacaagcttcacta 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  48818106 cagagaacactgattggaatgagaggagtgtgagtgcagagaaaagaacaagtttcatggtggtggaaaaagccatggtgagctataacaagcttcacta 48818205  T
Q  111 tgtcttggtgtttgttgtgtgaaatgtaagctcctcagggtgatcttatatagcagtgaatgcacacacgttaatacgttatcaatcaatttctctatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48818206 tgtcttggtgtttgttgtgtgaaatgtaagctcctcagggtgatcttatatagcagtgaatgcacacacgttaataggttatcaatcaatttctctatat 48818305  T
Q  211 aaaatgaaaatcattatttccgcatatcaataattata-ttttgtttattcacgaatgatacgataataatatatgaaaatgctaaagaatgtctcttag 309  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  48818306 aaaatgaaaatcattatttccgcatatcaataattatatttttctttattcacgaatgatacgataataatatatgaaaatgttaaagaatctctcttag 48818405  T
Q  310 accctctttaaaaattagatcttgctaacttgtatcataacattaaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatc 409  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  48818406 atcctctttaaaaattaggtcttgctaacttgtatcataacattaaaagtttaactttggaaattgtgcattcataacattaaaagtttaaaaacttatc 48818505  T
Q  410 ttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattttcctt 490  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  48818506 ttttcaatgcattatttattgtttaattctattttaagatccttatgttgtgtcctaagggcacaagttagcatttccctt 48818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 359 - 487
Target Start/End: Complemental strand, 27574689 - 27574562
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||||||  |||||||||| ||||||| ||||||  |||||| |||||||||||||| || |||||||  |||||||||||||||||||| |||| ||    
T  27574689 tttaactttaaaaattgtgcattcataactttaaaatcttaaaattttatcttttcaattcaatatttattatttaattctattttaagatctttatctt 27574590  T
Q  459 gtgtccaaagagcacaagttagcattttc 487  Q
    ||||  |||| ||| |||||| |||||||    
T  27574589 gtgtgtaaag-gcataagttaacattttc 27574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 488
Target Start/End: Original strand, 6942451 - 6942580
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    ||||| ||||||||||||||| || | | |||||||||||||||| |||||||||||||||   ||||||  |||||||||||||| ||||  |||| ||    
T  6942451 tttaattttggaaattgtgcattcttgatcttaaaagtttaaaaacttatcttttcaatgccacatttattttttaattctatttttagatttttatctt 6942550  T
Q  459 gtgtccaaagagcacaagttagcattttcc 488  Q
    ||| || ||| |||||| ||| ||||||||    
T  6942551 gtgccctaagggcacaaattaacattttcc 6942580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 33977801 - 33977867
Alignment:
Q  389 ttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||||||    
T  33977801 ttaaaagtttaaaaatttatcttttcaatgcaatatttattttttaattatattttaatatccttat 33977867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 485
Target Start/End: Original strand, 19594460 - 19594549
Alignment:
Q  396 tttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattt 485  Q
    |||||||| ||||||||||||| || ||||||| || ||||||||||||||||||| ||| ||||| || ||  ||||||||||||||||    
T  19594460 tttaaaaacttatcttttcaatacaatatttattgtataattctattttaagatccctatcttgtgacctaacggcacaagttagcattt 19594549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 40293652 - 40293582
Alignment:
Q  385 aaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    ||||||||||  |||||||||||||||||||| ||| |||||||  |||||||||||||||||||| ||||    
T  40293652 aaccttaaaatcttaaaaatttatcttttcaacgcaatatttattatttaattctattttaagatctttat 40293582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 7162239 - 7162305
Alignment:
Q  389 ttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    ||||||||||||| | |||||| ||||||| | |||||||  |||||||||||||||||||||||||    
T  7162239 ttaaaagtttaaacaattatctcttcaatgtaatatttattttttaattctattttaagatccttat 7162305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 6942259 - 6942323
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtg 461  Q
    ||||||| ||||||||||||| || ||||||| |||||||| |||||||||||| |||| |||||    
T  6942259 ttaaaaacttatcttttcaatacaatatttattgtttaattttattttaagatctttatcttgtg 6942323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 2720625 - 2720536
Alignment:
Q  365 tttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    ||||||||||||||| | | || |||||| | ||||||| |||||| ||||||||| ||||||   |||||||||||||| ||||||||||    
T  2720625 tttggaaattgtgcatttagaatcttaaa-gcttaaaaagttatctcttcaatgcaatatttaatttttaattctatttttagatccttat 2720536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 39835807 - 39835705
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcct 452  Q
    ||||| ||||| |||  |||||||| | |||||| ||||||||  |||||| ||||||||| |||| | |||||||  |||||||||||||| | |||||    
T  39835807 taaaaatttaattttataaattgtgtattcataatcttaaaagcctaaaaacttatcttttaaatgtaatatttattttttaattctatttttaaatcct 39835708  T
Q  453 tat 455  Q
    |||    
T  39835707 tat 39835705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 2075242 - 2075190
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagat 449  Q
    ||||||||||||||||| |||||| ||||| |  |||||||||||||||||||    
T  2075242 ttaaaaatttatctttttaatgcaatattttttatttaattctattttaagat 2075190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 461
Target Start/End: Complemental strand, 17354552 - 17354488
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtg 461  Q
    ||||||| ||||||||||||| || |||||||  ||| |||||||||||||||| |||| |||||    
T  17354552 ttaaaaacttatcttttcaatacaatatttattatttgattctattttaagatctttatcttgtg 17354488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 29431829 - 29431895
Alignment:
Q  362 aactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttat 428  Q
    ||||||| |||||||||| ||| ||| ||||||  ||||||||||||| ||||||| || |||||||    
T  29431829 aactttgaaaattgtgcattcacaactttaaaaacttaaaaatttatcatttcaatacaatatttat 29431895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 54612611 - 54612696
Alignment:
Q  369 gaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    ||||||||| | ||||||  ||||||||||||||  |||| |||||||||||  ||||||  |||||||||| ||| ||||||||||    
T  54612611 gaaattgtgtattcataaatttaaaagtttaaaatcttatattttcaatgcaacatttat-ttttaattctagttttagatccttat 54612696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 48792555 - 48792650
Alignment:
Q  11 cagagaacactgattggaatgagaggagtgtgagtgcagagaaaagaacaagtttcatggtggtggaaaaagccattgtgcgctataacaagcttcact 109  Q
    |||||| ||||| ||||||  |||||||||| ||  | ||||||||| | ||||||||||||||||   |||||| |||| |||||| | |||||||||    
T  48792555 cagagaccactgcttggaagtagaggagtgtaagaactgagaaaagagctagtttcatggtggtgg---aagccactgtgagctatagctagcttcact 48792650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 463
Target Start/End: Complemental strand, 34819827 - 34819734
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtc 463  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||| |||||||    
T  34819827 aaattgtgcattcataaccttaaaagttaaaaaatttatcttttcaatacaatttttattgtttaattctattttaagattcttatcttgtgtc 34819734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 488
Target Start/End: Complemental strand, 33968041 - 33967912
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||| |||||||||||||| ||||||||||||||  ||||||| |||| |||| ||| || ||||||| ||||| ||||||| |||||||||||| ||    
T  33968041 tttaacattggaaattgtgcattcataaccttaaaaacttaaaaagttatatttttaatacaatatttattgtttatttctattataagatccttatctt 33967942  T
Q  459 gtgtccaaagagcacaagttagcattttcc 488  Q
    ||| |  ||| |||||||||| ||||||||    
T  33967941 gtgccttaagggcacaagttaacattttcc 33967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 33640956 - 33641051
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctta 454  Q
    ||||| ||| |||||| |||| ||||||| ||||||  ||||||| |||| |||||||| || ||||||| |||||||||||||||||||||||||    
T  33640956 tttaattttagaaattttgcattcataactttaaaatcttaaaaacttatattttcaatacaatatttattgtttaattctattttaagatcctta 33641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 449
Target Start/End: Complemental strand, 50303075 - 50302985
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagat 449  Q
    |||||| |||||||||||||| |||||| |||||||||| ||||| |||| |||||||| || ||||||| ||||  ||||||||||||||    
T  50303075 tttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagat 50302985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 490
Target Start/End: Original strand, 51390310 - 51390433
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtcca 465  Q
    |||||||||||||| ||||||  ||||||| |||||| ||||||||||| |||||  ||||||  |||||| ||||||| |||| ||||| ||||||||     
T  51390310 ttggaaattgtgcattcataattttaaaaggttaaaa-tttatcttttcgatgcaacatttattctttaatactatttttagattcttatcttgtgtcct 51390408  T
Q  466 aagagcacaagttagcattttcctt 490  Q
     || |||||||||| |||| |||||    
T  51390409 tagggcacaagttaacattctcctt 51390433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 50164021 - 50164144
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtcca 465  Q
    |||||||||||||| ||||||  | ||||  |||||| |||||||||||||| ||  ||||||  |||||||| | ||| |||||||||| ||||| ||     
T  50164021 ttggaaattgtgcattcataatttgaaaaacttaaaagtttatcttttcaatacaacatttattttttaattccacttttagatccttatcttgtgccct 50164120  T
Q  466 aagagcacaagttagcattttcct 489  Q
    ||| |||||||||| |||||||||    
T  50164121 aagggcacaagttaacattttcct 50164144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 12790089 - 12790198
Alignment:
Q  381 tcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttag 480  Q
    ||||||||| ||||  ||||||||||||||||||||| || |||||||  |||||| ||||||||||||  |||| ||||| || ||  | |||||||||    
T  12790089 tcataacctaaaaatcttaaaaatttatcttttcaatacaatatttattatttaatcctattttaagatatttatattgtggcctaaaggtacaagttag 12790188  T
Q  481 cattttcctt 490  Q
    ||||| ||||    
T  12790189 catttccctt 12790198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 455
Target Start/End: Original strand, 55406888 - 55406989
Alignment:
Q  354 aaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctt 453  Q
    |||| |||||||||  |||||||||| | ||||||||||||  || |||| |||| ||| |||| || ||||||  ||||||||||||||||||||||||    
T  55406888 aaaaatttaactttaaaaattgtgcatttataaccttaaaaactttaaaacttatttttccaatacaatatttagtgtttaattctattttaagatcctt 55406987  T
Q  454 at 455  Q
    ||    
T  55406988 at 55406989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 461
Target Start/End: Original strand, 28958582 - 28958683
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||||||| ||| |||  | |||| |||||||||| |||||| |||||||||||||| || || |||| ||||| |||| ||||||||||||||| ||    
T  28958582 tttaactttgaaaagtgtatattcatgaccttaaaagcttaaaa-tttatcttttcaatacaataattattgtttacttctgttttaagatccttatctt 28958680  T
Q  459 gtg 461  Q
    |||    
T  28958681 gtg 28958683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 460
Target Start/End: Complemental strand, 47068975 - 47068885
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgt 460  Q
    |||||||||| ||||||| ||||||  ||||||| ||||||||| ||| || |||||||  || | ||||||| |||||||||||| ||||    
T  47068975 aaattgtgcattcataactttaaaaacttaaaaaattatctttttaatacaatatttattattgatttctattctaagatccttatcttgt 47068885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 461
Target Start/End: Complemental strand, 52247526 - 52247425
Alignment:
Q  360 ttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttg 459  Q
    |||| ||| ||||||||||| |||||  ||||||||  |||| | || |||||| ||| || ||||||| ||||||||||||||||| ||| |||| |||    
T  52247526 ttaattttagaaattgtgcattcatattcttaaaagcctaaatacttgtctttttaatacaatatttattgtttaattctattttaaaatctttatcttg 52247427  T
Q  460 tg 461  Q
    ||    
T  52247426 tg 52247425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 485
Target Start/End: Original strand, 14998767 - 14998881
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaaga 469  Q
    ||||||| || |||||| ||||||| |||||||| || ||||||||||  | ||| |||  ||||||||||||||| ||| ||||| |||||||  |||     
T  14998767 aaattgtacattcataatcttaaaaatttaaaaactt-tcttttcaatataatatatattttttaattctattttatgattcttatcttgtgtcataagg 14998865  T
Q  470 gcacaagttagcattt 485  Q
      ||||||||||||||    
T  14998866 atacaagttagcattt 14998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 21758370 - 21758269
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||||||||||||| |||| |||  |||| ||||| ||||| | ||| ||||| ||| || |||||||  || |||||||||||||||| ||||| ||    
T  21758370 tttaactttggaaattatgcattcaatacctcaaaaggttaaatagttaactttttaatacaatatttattatt-aattctattttaagattcttatctt 21758272  T
Q  459 gtg 461  Q
    |||    
T  21758271 gtg 21758269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 28309565 - 28309469
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatc 450  Q
    ||||| |||||||||  ||||||| ||  ||||||||||||  || ||||| |||| |||||||| || |||||||  |||| |||||||||||||||    
T  28309565 taaaaatttaactttaaaaattgtacatacataaccttaaagattaaaaaacttattttttcaatacaatatttat-ttttagttctattttaagatc 28309469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 366 - 490
Target Start/End: Original strand, 36438395 - 36438519
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtcca 465  Q
    ||||||||| |||| ||||||||||||||  || |||| |||| ||||||||||| |||||||  || |||||||||||||||||||||| ||||| ||     
T  36438395 ttggaaattttgcattcataaccttaaaaacttcaaaacttatattttcaatgcaatatttatttttaaattctattttaagatccttattttgtgccct 36438494  T
Q  466 aagagcacaagttagcattttcctt 490  Q
    ||| |||||||||| ||||||||||    
T  36438495 aagggcacaagttaacattttcctt 36438519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 455
Target Start/End: Complemental strand, 47950080 - 47949995
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    |||||||||| ||||||||||||||| ||||||| || ||||||||||||| |||||||  |||||||||||||||||||||||||    
T  47950080 aaattgtgcattcataaccttaaaagcttaaaaacttgtcttttcaatgcaatatttattttttaattctattttaagatccttat 47949995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 21008199 - 21008304
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||||||| |||| ||||| |||  |||||||||  ||||||| ||||||||||||| || |||||||  ||||||||||||||||||| ||||| ||    
T  21008199 tttaactttgaaaatcgtgcattcaataccttaaaaacttaaaaagttatcttttcaatacaatatttattatttaattctattttaagattcttatatt 21008298  T
Q  459 gtgtcc 464  Q
    ||||||    
T  21008299 gtgtcc 21008304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 50075600 - 50075685
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||| ||| ||||||| ||||| ||||||||||| ||| ||||    
T  50075600 aaattgtgcattcataatcttaaaagtttaaaaagttatcttttcaacgcaatatttattgtttatttctattttaaaatctttat 50075685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 486
Target Start/End: Original strand, 11908550 - 11908670
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtcca 465  Q
    |||||||||||||| ||||||  ||||||||||||||| ||||||||||||||||  ||||||  ||||||||||| || ||||| |||| |||||  |     
T  11908550 ttggaaattgtgcattcataattttaaaagtttaaaaacttatcttttcaatgcaacatttattttttaattctatatttagatctttatattgtgctct 11908649  T
Q  466 aagagcacaagttagcatttt 486  Q
     |||||| |||||| ||||||    
T  11908650 tagagcataagttaacatttt 11908670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Complemental strand, 12570206 - 12570080
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||| ||| |||||||||| |||||| |||||||||| ||||| |||| |||| ||| || ||||||| ||||  ||||||||||||||| |||| ||    
T  12570206 tttaaccttgaaaattgtgcattcataatcttaaaagttcaaaaacttatatttttaatacaatatttattgtttgtttctattttaagatctttatctt 12570107  T
Q  459 gtgtccaaagagcacaagttagcattt 485  Q
    ||| ||  || |||||||||| |||||    
T  12570106 gtgcccttagggcacaagttaacattt 12570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 479
Target Start/End: Complemental strand, 14149571 - 14149452
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||||||| |||||||| | |||| |||||||||| |||||| ||| |||||||||| || || |||| ||||| |||||||||||||| ||||| ||    
T  14149571 tttaactttgaaaattgtgtattcatgaccttaaaagcttaaaatttt-tcttttcaatacaataattattgtttacttctattttaagattcttatctt 14149473  T
Q  459 gtgtccaaagagcacaagtta 479  Q
     || || ||| ||||||||||    
T  14149472 atgccctaagggcacaagtta 14149452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 47445989 - 47446069
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatc 450  Q
    |||||||||| | |||| |||||||||| ||||||||||||||||||| || |||||||  |||||||||||||| |||||    
T  47445989 aaattgtgcatttataatcttaaaagttaaaaaatttatcttttcaatacaatatttattatttaattctatttttagatc 47446069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 446
Target Start/End: Complemental strand, 13383134 - 13383047
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaa 446  Q
    |||||||| | |||||||||| |||||| |||||||||||||||| |||| |||| ||| || ||||||| ||||| |||||||||||    
T  13383134 tttaacttcgaaaattgtgcattcataatcttaaaagtttaaaaacttatatttttaatacaatatttattgtttatttctattttaa 13383047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 24439230 - 24439128
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcct 452  Q
    ||||| ||||| |||| |||||||||| |||||| |||||||||||||||| |||| |||| ||| || |||||||  ||||||||||| || |||| ||    
T  24439230 taaaaatttaattttgaaaattgtgcattcataatcttaaaagtttaaaaacttatttttttaatacaatatttattttttaattctatatttagattct 24439131  T
Q  453 tat 455  Q
    |||    
T  24439130 tat 24439128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 461
Target Start/End: Complemental strand, 35652583 - 35652482
Alignment:
Q  360 ttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttg 459  Q
    ||||||||| |||||||||| ||  |||||||| |  ||||||| |||||||||||||||| |||||||  |||||||  ||||||||||| |||| |||    
T  35652583 ttaactttgaaaattgtgcattctaaaccttaacaacttaaaaacttatcttttcaatgcaatatttattatttaatttaattttaagatctttatcttg 35652484  T
Q  460 tg 461  Q
    ||    
T  35652483 tg 35652482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 490
Target Start/End: Original strand, 47176746 - 47176867
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagttt-aattctattttaagatccttatgttgtgtccaaag 468  Q
    |||||||||| |||||| ||| ||||| |||||| | || ||||||||||| |||||||  ||| ||||||||||| |||||||||| |||||  |  ||    
T  47176746 aaattgtgcattcataatctttaaagtataaaaactcatattttcaatgcaatatttattttttaaattctatttttagatccttatcttgtgctcttag 47176845  T
Q  469 agcacaagttagcattttcctt 490  Q
     |||||||||| ||||||||||    
T  47176846 ggcacaagttaacattttcctt 47176867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 7789550 - 7789449
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcct 452  Q
    |||||||||||  ||| |||||||||| | ||||| | ||||  |||||||||||| ||||||||||| |||||||  |||||||| ||||||||||| |    
T  7789550 taaaagtttaatcttgaaaattgtgcatttataacttcaaaatcttaaaaatttat-ttttcaatgcaatatttattttttaattccattttaagatcat 7789452  T
Q  453 tat 455  Q
    |||    
T  7789451 tat 7789449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 46288884 - 46288800
Alignment:
Q  371 aattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    |||||| || ||||||||||||||  ||||||| |||| || |||||  | ||||||| ||||||||||||||| ||||||||||    
T  46288884 aattgtacattcataaccttaaaaacttaaaaacttattttatcaatataatatttattgtttaattctattttgagatccttat 46288800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 479
Target Start/End: Original strand, 47449226 - 47449299
Alignment:
Q  406 tatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagtta 479  Q
    |||||||||||| || |||||||   |||||||||||||||||| ||||| ||||| || ||| ||||||||||    
T  47449226 tatcttttcaatacaatatttattagttaattctattttaagattcttatcttgtggcctaagggcacaagtta 47449299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 30321998 - 30322058
Alignment:
Q  385 aaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctatttta 445  Q
    ||||||||||  ||||||| |||||||||||||||| |||||||  || ||||||||||||    
T  30321998 aaccttaaaatcttaaaaacttatcttttcaatgcaatatttattattcaattctatttta 30322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 18033733 - 18033646
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctt 453  Q
    ||||| |||||||| | |||| |||||||  ||||||||||||||||| ||||||  ||||||  ||||||||||  || ||||||||    
T  18033733 ttggatattgtgcatttataatcttaaaaacttaaaaatttatctttttaatgcaacatttattttttaattctacatttagatcctt 18033646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 479
Target Start/End: Original strand, 34967700 - 34967790
Alignment:
Q  389 ttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagtta 479  Q
    |||||||||||||| ||||| |||||||||||  | ||||  |||||||||||||| || | ||||  ||||| || ||| ||||||||||    
T  34967700 ttaaaagtttaaaattttatattttcaatgcaaaagttatcttttaattctatttttagtttcttaacttgtgccccaagggcacaagtta 34967790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 461
Target Start/End: Complemental strand, 10987299 - 10987198
Alignment:
Q  360 ttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttg 459  Q
    ||||| ||| |||||||||| |   ||| ||||||  ||||||| |||||||||||||||| |||||||  ||  | |||||||||||||| |||| |||    
T  10987299 ttaaccttgaaaattgtgcattttaaactttaaaatcttaaaaacttatcttttcaatgcaatatttattattggaatctattttaagatctttatcttg 10987200  T
Q  460 tg 461  Q
    ||    
T  10987199 tg 10987198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 485
Target Start/End: Complemental strand, 8890760 - 8890676
Alignment:
Q  402 aatttatcttttcaatgcattatttatagttt-aattctattttaagatccttatgttgtgtccaaagagcacaagttagcattt 485  Q
    ||||||| ||||||| ||| |||||||  ||| ||||||||||| |||| ||||| ||||| ||  ||||||||||||| |||||    
T  8890760 aatttatattttcaacgcaatatttatttttttaattctatttttagattcttatcttgtgaccttagagcacaagttaacattt 8890676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 10101298 - 10101246
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagat 449  Q
    ||||||| ||||||||| ||| || |||||||  |||||||||||||||||||    
T  10101298 ttaaaaacttatctttttaatacaatatttattatttaattctattttaagat 10101246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 19439420 - 19439476
Alignment:
Q  388 cttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctatttt 444  Q
    ||||||| |||| ||||||||||||| ||||||  ||||||| ||||| ||||||||    
T  19439420 cttaaaaatttataaatttatctttttaatgcaagatttatattttaaatctatttt 19439476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 2457927 - 2458057
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||| |||| ||||||||| ||||||||||||||| |||| |  ||||||||||||| || |||| || |||||||||||||||||||||||||| ||    
T  2457927 tttaacattgggaattgtgcattcataaccttaaaagcttaagagcttatcttttcaatacaatattgattgtttaattctattttaagatccttatttt 2458026  T
Q  459 gtgtccaaagagcacaagttagcattttcct 489  Q
     || |  ||| | |||||||| |||||||||    
T  2458027 atgccttaagggtacaagttaacattttcct 2458057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 490
Target Start/End: Original strand, 23031748 - 23031875
Alignment:
Q  362 aactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtg 461  Q
    ||||||| |||||||||| ||| ||||||||||  ||||||||||||||||| ||| || ||||||| ||| ||||||||||||||||| |||| |||||    
T  23031748 aactttgaaaattgtgcattcacaaccttaaaaacttaaaaatttatctttttaatacaatatttattgttcaattctattttaagatcattatcttgtg 23031847  T
Q  462 tccaaagagcacaagttagcattttcctt 490  Q
     || ||| ||| |||||| ||||| ||||    
T  23031848 ccctaag-gcagaagttaacatttccctt 23031875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 3399301 - 3399226
Alignment:
Q  388 cttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtc 463  Q
    |||||||||||||||| |||| ||||||||||| |||||||  || | ||||||||| |||||||||| |||||||    
T  3399301 cttaaaagtttaaaaacttatgttttcaatgcaatatttatttttcatttctatttttagatccttatcttgtgtc 3399226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 486
Target Start/End: Original strand, 36783278 - 36783365
Alignment:
Q  399 aaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcatttt 486  Q
    ||||| ||||||||||||| || |||||||  ||||||||||||||||||| ||||| ||||| ||  || |||||||||| ||||||    
T  36783278 aaaaagttatcttttcaatacaatatttattatttaattctattttaagattcttatcttgtgcccttagtgcacaagttaacatttt 36783365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 490
Target Start/End: Original strand, 32546443 - 32546580
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcct 452  Q
    ||||| |||||  |||||||||||| | | ||||  ||||||  |||||||||||||||||||||| |  ||||||  |||||||  | ||| |||||||    
T  32546443 taaaaatttaatattggaaattgtgaatttataattttaaaaagttaaaaatttatcttttcaatgtaacatttattttttaatttcacttttagatcct 32546542  T
Q  453 tatgttgtgtccaaagagcacaagttagcattttcctt 490  Q
    ||| || || ||  ||||||||||||| ||||||||||    
T  32546543 tatcttatgcccttagagcacaagttaacattttcctt 32546580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 32650154 - 32650065
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    ||||||||||||||  ||||| |||||||  ||||||||||||||||||||| ||  ||||||  |||||||| | ||| ||||||||||    
T  32650154 ttggaaattgtgcatgcataatcttaaaaacttaaaaatttatcttttcaatacaacatttattttttaattccacttttagatccttat 32650065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 440
Target Start/End: Complemental strand, 44599476 - 44599389
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattcta 440  Q
    ||||| |||||| ||  |||||||||| | ||||||||||||  ||||||| |||| |||||||| || |||||||  ||||||||||    
T  44599476 taaaaatttaaccttaaaaattgtgcatttataaccttaaaatcttaaaaacttatattttcaatacaatatttattatttaattcta 44599389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 369 - 454
Target Start/End: Original strand, 28226187 - 28226272
Alignment:
Q  369 gaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctta 454  Q
    ||||||||| | |||||| |||||||||||||||| |||||||||||||  | ||||||| |||||||||||||||||||||||||    
T  28226187 gaaattgtgtattcataatcttaaaagtttaaaaacttatcttttcaatataatatttattgtttaattctattttaagatcctta 28226272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 485
Target Start/End: Original strand, 43664816 - 43664931
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaaga 469  Q
    |||||||||| ||| || |||||||||||||||| |||| ||||||||| | |||||||  |||||||||||||| ||||| |||| |||| ||| |||     
T  43664816 aaattgtgcattcaaaatcttaaaagtttaaaaacttatattttcaatgtaatatttattttttaattctatttttagatcattatcttgtttcctaagg 43664915  T
Q  470 gcacaagttagcattt 485  Q
    ||||| ||||||||||    
T  43664916 gcacacgttagcattt 43664931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 369 - 487
Target Start/End: Original strand, 11252583 - 11252701
Alignment:
Q  369 gaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaag 468  Q
    ||||||||| | |||||| ||||||||||| |||| ||||||||||||| ||  ||||||  | |||||||||||| |||||||||| ||||| || |||    
T  11252583 gaaattgtgaattcataatcttaaaagtttcaaaacttatcttttcaatacaccatttattttctaattctatttttagatccttatcttgtgccctaag 11252682  T
Q  469 agcacaagttagcattttc 487  Q
     |||||||||| |||||||    
T  11252683 ggcacaagttaacattttc 11252701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 490
Target Start/End: Original strand, 43592736 - 43592829
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattttcctt 490  Q
    ||||||| ||||||||||||| || ||||||| |||| |||||||||||||||| |||| ||||| || ||| |||||||||||||||| ||||    
T  43592736 ttaaaaacttatcttttcaatacaatatttattgtttcattctattttaagatctttatcttgtgccctaagggcacaagttagcatttccctt 43592829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 485
Target Start/End: Complemental strand, 35813884 - 35813764
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaattta-tcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtcc 464  Q
    |||||||||||||| |||||| |||||||||| ||||| ||| | ||||||||  | ||||||| ||||| ||||||||||||||| |||| ||||| ||    
T  35813884 ttggaaattgtgcattcataatcttaaaagttaaaaaacttactattttcaatataatatttattgtttatttctattttaagatctttatcttgtgccc 35813785  T
Q  465 aaagagcacaagttagcattt 485  Q
      || |||||||||| |||||    
T  35813784 ttagggcacaagttaacattt 35813764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 8335244 - 8335327
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctt 453  Q
    ||||| |||| ||||||  ||||||||||||||| |||| |||||||||||  ||||||  |||||||||||||| ||||||||    
T  8335244 aaattatgcattcataatgttaaaagtttaaaaacttatattttcaatgcaacatttattttttaattctatttttagatcctt 8335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 13915887 - 13915950
Alignment:
Q  383 ataaccttaaaagtttaaaaatttatcttttcaatgc-attatttatagtttaattctatttta 445  Q
    |||| ||||||||||||||||||||| |||||||||| | |||||||  |||||||||||||||    
T  13915887 ataaacttaaaagtttaaaaatttatattttcaatgcaaatatttattttttaattctatttta 13915950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 488
Target Start/End: Complemental strand, 30561026 - 30560935
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattttcc 488  Q
    ||||||| ||||||||||||||||  ||||||  || ||||||| ||| |||||| ||| ||||| ||  || |||||||||||||||||||    
T  30561026 ttaaaaacttatcttttcaatgcaacatttatttttaaattctacttttagatccctatcttgtgcccttagggcacaagttagcattttcc 30560935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 39958842 - 39958925
Alignment:
Q  360 ttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattt 443  Q
    ||||||||  |||||||| | |||| |||||||||| |||||||| |||||||||||| || ||||||  ||||| ||||||||    
T  39958842 ttaactttaaaaattgtgtattcatgaccttaaaagcttaaaaatatatcttttcaatacaatatttagtgtttatttctattt 39958925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 9707121 - 9707191
Alignment:
Q  391 aaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtg 461  Q
    |||||||| |||| ||||||||||||||||  ||||||  |||||||||||||| ||||| |||| |||||    
T  9707121 aaaagttttaaaacttatcttttcaatgcaacatttattttttaattctatttttagatctttatcttgtg 9707191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 489
Target Start/End: Complemental strand, 1688062 - 1687928
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcct 452  Q
    ||||| ||||| |||  ||||||| || ||||||  | ||||||||||||| ||||||||||||||||   |||||  ||||||| |||||| | |||||    
T  1688062 taaaaatttaattttaaaaattgtacattcataatttaaaaagtttaaaaacttatcttttcaatgcaacctttattttttaattttatttttaaatcct 1687963  T
Q  453 tatgttgtgtccaaagagcacaagttagcattttcct 489  Q
    ||| |||| |   | || |||||||||||||||||||    
T  1687962 tatattgtat--taggaccacaagttagcattttcct 1687928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 7721621 - 7721685
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtg 461  Q
    ||||||| ||||||||||||||||  ||||||  |||||||||||||| ||||| |||| |||||    
T  7721621 ttaaaaacttatcttttcaatgcaacatttattttttaattctatttttagatcattatattgtg 7721685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 4283430 - 4283533
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||||||  |||||||||  ||||||||||||||  ||||||| |||| |||| |||  | |||||||  ||||||||||||| |||||  |||| ||    
T  4283430 tttaactttaaaaattgtgctttcataaccttaaaatcttaaaaacttatatttttaatataatatttattatttaattctatttcaagatatttatctt 4283529  T
Q  459 gtgt 462  Q
    ||||    
T  4283530 gtgt 4283533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 5578018 - 5578113
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctta 454  Q
    ||||| ||||||||||||||| | |  | ||| |||||||||||| |||| |||||||| ||  ||||||  ||||||||| |||| |||||||||    
T  5578018 tttaattttggaaattgtgcatttaatatcttgaaagtttaaaaacttattttttcaatacaaaatttatgttttaattctctttttagatcctta 5578113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 449
Target Start/End: Complemental strand, 9886944 - 9886853
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaat-ttatcttttcaatgcattatttatagtttaattctattttaagat 449  Q
    |||||| ||| |||||||||| ||||||| ||||||  | |||||  ||||||||||||| || |||| ||  |||||||||||||||||||    
T  9886944 tttaaccttgaaaattgtgcattcataacattaaaacctgaaaaaacttatcttttcaatacaatattaattatttaattctattttaagat 9886853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 33434337 - 33434259
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctatttt 444  Q
    |||||||||||||| ||| || |||||||   | ||||||||||||||||||| |  ||||||  ||||||||||||||    
T  33434337 ttggaaattgtgcattcaaaatcttaaaaagcttaaaatttatcttttcaatgaaacatttattttttaattctatttt 33434259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 1662400 - 1662340
Alignment:
Q  354 aaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttc 414  Q
    |||| ||||||||||||||||||||  |||  |||| ||||| ||||||| ||||||||||    
T  1662400 aaaaatttaactttggaaattgtgctttcaatacctcaaaagcttaaaaagttatcttttc 1662340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 32839090 - 32839142
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatctt 411  Q
    |||||| || ||||||||||| |||||||||||||| || ||||| |||||||    
T  32839090 tttaaccttagaaattgtgcattcataaccttaaaaattaaaaaacttatctt 32839142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 33440856 - 33440912
Alignment:
Q  371 aattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattattta 427  Q
    ||||||||| | ||||||||||||  ||||||| ||||||||||||| || ||||||    
T  33440856 aattgtgcatttataaccttaaaatcttaaaaacttatcttttcaatacaatattta 33440912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 33441824 - 33441892
Alignment:
Q  422 tatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattttcctt 490  Q
    |||||||  |||| ||||||||||||||| |||| |||||||| | ||| |||||||| ||||| ||||    
T  33441824 tatttattatttacttctattttaagatctttattttgtgtcctatgagtacaagttaacatttccctt 33441892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 359 - 490
Target Start/End: Original strand, 12398067 - 12398198
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatc-ttttcaatgcattatttatagtttaattctattttaagatccttatgt 457  Q
    |||||| ||||||||||| || ||||||||||||||| ||||||| ||| | |||||||| ||| ||||||  ||||||| ||||||||||||||||| |    
T  12398067 tttaaccttggaaattgtacattcataaccttaaaagcttaaaaacttaactttttcaatacataatttattatttaattatattttaagatccttatct 12398166  T
Q  458 tgtgtccaaagagcacaagttagcattttcctt 490  Q
    |||| |  ||| ||||| |||||||||| ||||    
T  12398167 tgtg-cataagggcacaggttagcatttccctt 12398198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 460
Target Start/End: Original strand, 23736932 - 23737042
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaat---gcattatttatagtttaattctattttaagat 449  Q
    |||||||||||  ||  |||||||||| ||||||| ||||||| ||||||| |||||||||||||     ||||||||| ||||||||||||||||||||    
T  23736932 taaaagtttaatcttaaaaattgtgcattcataactttaaaagattaaaaacttatcttttcaatataatattatttattgtttaattctattttaagat 23737031  T
Q  450 ccttatgttgt 460  Q
    | |||| ||||    
T  23737032 ctttatcttgt 23737042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 485
Target Start/End: Original strand, 33274295 - 33274395
Alignment:
Q  385 aaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcatt 484  Q
    ||||||||||  |||||||||||||||||||||||| |||||||  |||| ||||||||||||||| || | ||||| || |||  ||||||||| ||||    
T  33274295 aaccttaaaatcttaaaaatttatcttttcaatgcaatatttattatttatttctattttaagatctttctcttgtgccctaaggacacaagttaacatt 33274394  T
Q  485 t 485  Q
    |    
T  33274395 t 33274395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 370 - 485
Target Start/End: Complemental strand, 40330229 - 40330114
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaaga 469  Q
    |||||||||| |||||| ||||||| |||||||| |||| |||||||| || |||||||  |||| || |||||||| ||| |||| ||||| || || |    
T  40330229 aaattgtgcattcataatcttaaaaatttaaaaacttatattttcaatacaatatttattatttatttttattttaatatcattatcttgtgccctaata 40330130  T
Q  470 gcacaagttagcattt 485  Q
     |||||||||||||||    
T  40330129 tcacaagttagcattt 40330114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 18310518 - 18310642
Alignment:
Q  369 gaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgc---attatttatagtttaattctattttaagatccttatgttgtgtcca 465  Q
    |||||||| || ||||||| ||||||| ||||||| ||||||||||||| |   ||||||||| || |||||||||||||||||| |||| ||||  |      
T  18310518 gaaattgtacattcataactttaaaagattaaaaacttatcttttcaatacaatattatttattgtctaattctattttaagatctttatcttgttcctt 18310617  T
Q  466 aagagcacaagttagcattttcctt 490  Q
    ||||| |||||||| ||||| ||||    
T  18310618 aagagaacaagttaacatttccctt 18310642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 12892616 - 12892702
Alignment:
Q  369 gaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    |||||| |||| ||||||||||||||  ||||||| |||| ||||||||  | |||||||  ||||||| |||||||| ||||||||    
T  12892616 gaaattatgcattcataaccttaaaaacttaaaaacttatattttcaatataatatttattatttaattttattttaaaatccttat 12892702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 486
Target Start/End: Original strand, 30928835 - 30928924
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcatttt 486  Q
    ||||||| |||| |||| |||| | |||||||  || ||||||||||||| |||||||| |||| ||| |||||||||| ||| ||||||    
T  30928835 ttaaaaacttatatttttaatgtaatatttatttttaaattctattttaaaatccttatcttgtatcctaagagcacaaattaacatttt 30928924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 404423 - 404474
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagat 449  Q
    |||||||||||||||| |||| || ||||||| ||||||||||||||||||||    
T  404423 ttaaaaatttatcttt-caatacaatatttattgtttaattctattttaagat 404474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 39400958 - 39401024
Alignment:
Q  388 cttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctta 454  Q
    |||||||| ||||||| ||||| ||||||||||  ||||||  |||||||||||||| | |||||||    
T  39400958 cttaaaagcttaaaaacttatcatttcaatgcaacatttattttttaattctatttttaaatcctta 39401024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 490
Target Start/End: Complemental strand, 3494581 - 3494461
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaaga 469  Q
    |||||||||| |||||| |||||||  ||||||||||||||||| ||| ||  ||||||  |||||||| ||||| |||||||||| ||||||||  |      
T  3494581 aaattgtgcattcataatcttaaaaacttaaaaatttatctttttaatacaacatttattttttaattccatttttagatccttatcttgtgtccttaag 3494482  T
Q  470 gcacaagttagcattttcctt 490  Q
    |||||||||| ||||||||||    
T  3494481 gcacaagttaacattttcctt 3494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 12517116 - 12517201
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    ||||||| || |||||| |||||||| |||||||||||| ||||||||  | ||||||| ||||| ||||||||||||||||||||    
T  12517116 aaattgttcattcataatcttaaaagcttaaaaatttatattttcaataaaatatttattgtttatttctattttaagatccttat 12517201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 17904381 - 17904293
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattt 485  Q
    ||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| || || || ||  |||||||||| |||||    
T  17904381 ttaaaaatttatcttttcaatacaatttttattgtttaattctattttaagatccttatcttatgccctaaaggcacaagttaacattt 17904293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 455
Target Start/End: Complemental strand, 35470179 - 35470083
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttat 455  Q
    |||||| ||| ||||||| || ||||| || |||||| |||| |||||||||||||||| || || |||| |||||||||||||||||||| |||||    
T  35470179 tttaaccttgaaaattgttcattcatacccgtaaaagcttaataatttatcttttcaatacaatacttattgtttaattctattttaagattcttat 35470083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 446
Target Start/End: Original strand, 41174141 - 41174234
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaa 446  Q
    ||||| |||||| ||| ||||||| || |||||| |||||||  ||||||| |||| |||||||| || |||||||  ||||||||||||||||    
T  41174141 taaaaatttaaccttgaaaattgtacattcataaacttaaaatcttaaaaacttattttttcaatacaatatttattatttaattctattttaa 41174234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 18393300 - 18393351
Alignment:
Q  366 ttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaat 417  Q
    |||||||||||||| | |||||||||||| |||||||| |||||||||||||    
T  18393300 ttggaaattgtgcatttataaccttaaaaatttaaaaacttatcttttcaat 18393351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 28993953 - 28993886
Alignment:
Q  374 tgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctat 441  Q
    |||||| ||||||||| ||||||||||||| |||| ||| |||| || ||||||| ||||||||||||    
T  28993953 tgtgcattcataacctgaaaagtttaaaaacttatatttacaatacaatatttattgtttaattctat 28993886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 490
Target Start/End: Original strand, 5844370 - 5844490
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaaga 469  Q
    |||| ||||| ||| || ||||||  ||| |||| |||| |||||||||||  ||||||  |||||||||||||| || ||||||| || || ||  |||    
T  5844370 aaatcgtgcaatcacaatcttaaagattttaaaacttatattttcaatgcagcatttattttttaattctatttttaggtccttatcttatgcccgtaga 5844469  T
Q  470 gcacaagttagcattttcctt 490  Q
    | |||||||| ||||||||||    
T  5844470 gtacaagttatcattttcctt 5844490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 11935978 - 11936022
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaa 403  Q
    |||||||||| |||||||||| || ||||||||||||||||||||    
T  11935978 tttaactttgaaaattgtgcattcgtaaccttaaaagtttaaaaa 11936022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 486
Target Start/End: Complemental strand, 42207165 - 42207049
Alignment:
Q  370 aaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaaga 469  Q
    |||||||||| ||||||  ||||||  | ||||  |||| |||||||||||  ||||||   |||||| |||||| ||||| |||| ||||||||  |||    
T  42207165 aaattgtgcattcataattttaaaaactcaaaaccttatattttcaatgcaacatttatttcttaattttatttttagatctttatcttgtgtccttaga 42207066  T
Q  470 gcacaagttagcatttt 486  Q
    ||| |||||||||||||    
T  42207065 gcataagttagcatttt 42207049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 35563117 - 35563179
Alignment:
Q  399 aaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtg 461  Q
    ||||| |||| ||||||||| | |||||||  |||||||||||||||||||| |||| |||||    
T  35563117 aaaaacttatattttcaatgtaatatttattatttaattctattttaagatctttatcttgtg 35563179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Complemental strand, 12453951 - 12453919
Alignment:
Q  388 cttaaaagtttaaaaatttatcttttcaatgca 420  Q
    ||||||| |||||||||||||||||||||||||    
T  12453951 cttaaaaatttaaaaatttatcttttcaatgca 12453919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 449
Target Start/End: Original strand, 37194001 - 37194088
Alignment:
Q  361 taactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagat 449  Q
    ||||||| ||||||||||| ||||||| ||||||  ||||||| |||| |||| ||| |  |||||||  ||||||| |||||||||||    
T  37194001 taactttagaaattgtgcattcataactttaaaatcttaaaaacttat-ttttaaataccatatttattatttaattatattttaagat 37194088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 32604515 - 32604641
Alignment:
Q  359 tttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgtt 458  Q
    |||||| ||| |||||||||| |||||| | ||| || |||||||||||| |||||||| || ||||||| ||||| ||||||||||||||| | || ||    
T  32604515 tttaacattgaaaattgtgcattcataatcctaacagcttaaaaatttatattttcaatacaatatttattgtttatttctattttaagatcgtaatctt 32604614  T
Q  459 gtgtccaaagagcacaagttagcattt 485  Q
    ||| || ||  |||||||||| |||||    
T  32604615 gtgccctaaaggcacaagttaacattt 32604641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 1288217 - 1288129
Alignment:
Q  397 ttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattt 485  Q
    ||||||| |||| |||||||| || |||||||| |||||||||||||||| ||| |||| |||| ||| ||| |||||| |||||||||    
T  1288217 ttaaaaacttatattttcaatacaatatttataatttaattctattttaaaatctttattttgtatcctaagtgcacaaattagcattt 1288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 490
Target Start/End: Original strand, 37448 - 37546
Alignment:
Q  392 aaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatccttatgttgtgtccaaagagcacaagttagcattttcctt 490  Q
    |||||||||| | |||| ||||||||||| |||||||  |||||||||||||||| || ||||| ||||| |  ||| ||| |||||| ||||||||||    
T  37448 aaagtttaaacacttatattttcaatgcaatatttattttttaattctattttaatattcttatcttgtgccacaagggcataagttaacattttcctt 37546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 26454 - 26390
Alignment:
Q  353 taaaagtttaactttggaaattgtgcactcataaccttaaaagtttaaaaatttatcttttcaat 417  Q
    ||||| |||||| | | |||||||||| ||||||||||||||| |||||||||||| || |||||    
T  26454 taaaaatttaacctcgaaaattgtgcattcataaccttaaaagattaaaaatttatattatcaat 26390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 36544 - 36478
Alignment:
Q  388 cttaaaagtttaaaaatttatcttttcaatgcattatttatagtttaattctattttaagatcctta 454  Q
    |||||||| ||||||| ||||| ||||||||||  ||||||  |||||||||||||| | |||||||    
T  36544 cttaaaagcttaaaaacttatcatttcaatgcaacatttattttttaattctatttttaaatcctta 36478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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