View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_15 (Length: 530)
Name: NF18317_low_15
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 42358239 - 42358666
Alignment:
| Q |
18 |
atttcacggtggattcacaaaataaacccaaaccagaaccactattgctt---------ttaatttcacaagatgcttgaaacgattaaatacctaatcg |
108 |
Q |
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| T |
42358239 |
atttcacggtggattcaccaaataaacccaaaccagaaccactattgcttgcttcagatttaatttcacaagatgcttgaaacgattaaatacctaatcg |
42358338 |
T |
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| Q |
109 |
gatcggcgggtccaagcggttttggatccaaatccaccgccgaaccagtcacggaaacctgcggcgatctccgctccatcaccgctatcataacaggtgg |
208 |
Q |
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| T |
42358339 |
gatcggcgggtccaagcggttttggatccaaatccaccgccgaacaagtcacggaaacctgcggcgatctccgctccatcaccgctatcataacaggtgg |
42358438 |
T |
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| Q |
209 |
tacgtcaggaattggagcagaaacggcgcgtgttttggcgaagagaggggcgagggtgattctaccggcgcgtagcatgaaaaatgcggaggaaacaaga |
308 |
Q |
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| T |
42358439 |
tacgtcaggaattggagcagaaacggcgcgtgttttggcgaagagaggggcgagggtgattctaccggcgcgtagcatgaaaaatgcggaggaaacaaga |
42358538 |
T |
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| Q |
309 |
ggtagaatagtgacggagtgtcctgaagcggagattatagttatggcacttgatctcagttctctcaattctgttacgaacttcgttactcgttttcatt |
408 |
Q |
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| T |
42358539 |
ggtagaatagtgacggagtgtcctgaagcggagattatagttatggcacttgatctcagttctgtcaattctgttacgaacttcgttactcgttttcact |
42358638 |
T |
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| Q |
409 |
ccatcggtttccctctcaatctcctcat |
436 |
Q |
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| T |
42358639 |
ccatcggtttccctctaaatctcctcat |
42358666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 42358684 - 42358732
Alignment:
| Q |
466 |
ctctcatttaatgcaatagttatggcacttgattgttgactagtgttgt |
514 |
Q |
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| T |
42358684 |
ctctcatttcatgcaatagttatggcacttgattgttgactagtgttgt |
42358732 |
T |
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