View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_17 (Length: 507)

Name: NF18317_low_17
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_17
NF18317_low_17
[»] chr7 (12 HSPs)
chr7 (217-507)||(49170491-49170782)
chr7 (10-145)||(48654081-48654216)
chr7 (176-469)||(12196740-12197028)
chr7 (137-265)||(22077620-22077748)
chr7 (143-296)||(48654369-48654522)
chr7 (210-296)||(10289388-10289474)
chr7 (137-251)||(15874070-15874186)
chr7 (137-236)||(21491629-21491732)
chr7 (137-252)||(48576332-48576446)
chr7 (343-440)||(46002990-46003087)
chr7 (171-253)||(18367495-18367577)
chr7 (215-252)||(7503909-7503946)
[»] chr3 (7 HSPs)
chr3 (137-369)||(16975129-16975371)
chr3 (210-296)||(7337291-7337377)
chr3 (137-252)||(5004853-5004970)
chr3 (199-303)||(11968077-11968180)
chr3 (137-253)||(46404695-46404814)
chr3 (381-469)||(11968244-11968332)
chr3 (151-252)||(16475278-16475381)
[»] chr1 (10 HSPs)
chr1 (211-469)||(8421357-8421615)
chr1 (140-250)||(9537492-9537602)
chr1 (137-253)||(35762185-35762303)
chr1 (56-145)||(18473834-18473919)
chr1 (211-296)||(21264799-21264884)
chr1 (139-265)||(37667285-37667412)
chr1 (139-252)||(16074710-16074826)
chr1 (212-265)||(338047-338100)
chr1 (210-277)||(43407964-43408031)
chr1 (36-88)||(33007968-33008019)
[»] chr6 (9 HSPs)
chr6 (10-145)||(13773667-13773801)
chr6 (200-353)||(10751623-10751776)
chr6 (144-296)||(13777241-13777393)
chr6 (137-251)||(34636188-34636304)
chr6 (137-253)||(23260711-23260829)
chr6 (154-251)||(26182602-26182700)
chr6 (137-270)||(32450396-32450530)
chr6 (137-252)||(25005144-25005261)
chr6 (177-252)||(11166587-11166662)
[»] chr2 (9 HSPs)
chr2 (13-145)||(12774658-12774790)
chr2 (13-145)||(28267398-28267531)
chr2 (137-296)||(32735425-32735586)
chr2 (242-440)||(22403559-22403757)
chr2 (286-409)||(36732566-36732689)
chr2 (217-367)||(41340858-41341006)
chr2 (143-252)||(12774947-12775056)
chr2 (143-236)||(28267685-28267778)
chr2 (212-265)||(40447420-40447473)
[»] chr5 (3 HSPs)
chr5 (49-145)||(42861102-42861198)
chr5 (137-251)||(536731-536847)
chr5 (137-273)||(4558105-4558243)
[»] scaffold0413 (1 HSPs)
scaffold0413 (145-342)||(8748-8949)
[»] chr4 (6 HSPs)
chr4 (137-252)||(28969316-28969431)
chr4 (287-423)||(42900730-42900866)
chr4 (150-268)||(69235-69352)
chr4 (140-219)||(49499045-49499126)
chr4 (137-270)||(41868552-41868684)
chr4 (212-277)||(40458881-40458946)
[»] chr8 (3 HSPs)
chr8 (338-505)||(24422975-24423142)
chr8 (231-349)||(35839004-35839122)
chr8 (150-272)||(22816487-22816609)
[»] scaffold1838 (1 HSPs)
scaffold1838 (137-204)||(224-291)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 217 - 507
Target Start/End: Original strand, 49170491 - 49170782
Alignment:
Q  217 acttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcacagctacggtacagacacg 316  Q
    ||||||||||| ||||||||| |||| |||||||||||  |||||| ||| |||| | ||| |||||| ||||||||||||||||||||||  |||||||    
T  49170491 acttagtatggacgtatggggaaaaaacccttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacg 49170590  T
Q  317 ttttctgtcactccaggaattatttggacgatcggaccgttgaaaacgaagaaccgcatgtcttgaacacgctgtccaaaaattagcccaatcggacggt 416  Q
    |||||| |||||||||||  || || |||||||||||||||||||  ||||||||||||||   ||||||||| ||||||||||||| ||||||||||||    
T  49170591 ttttctctcactccaggagatagtttgacgatcggaccgttgaaattgaagaaccgcatgttgggaacacgctttccaaaaattagctcaatcggacggt 49170690  T
Q  417 gaatgaaggtgtagtcacaattctacgatgacaggtttgagaaaaacgaaaatagttccaatgagacattattctagga-ttagagattgaa 507  Q
    ||| ||||  |||||| |||||||||||||||| ||||||| ||||||||||| | | |||||||| |||||||||||| ||||||||||||    
T  49170691 gaacgaagccgtagtcgcaattctacgatgacatgtttgaggaaaacgaaaatggcttcaatgagatattattctaggatttagagattgaa 49170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 48654081 - 48654216
Alignment:
Q  10 aagaatatataggcacatatatgctaaaaataacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacattta 109  Q
    ||||||||||   |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48654081 aagaatatatcaccacatatatgctaaaaataacaatacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacattta 48654180  T
Q  110 ttaatttatccaggaagaatttcagcaaccatataa 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  48654181 ttaatttatccaggaagaatttcagcaaccatataa 48654216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 176 - 469
Target Start/End: Original strand, 12196740 - 12197028
Alignment:
Q  176 agacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaa 275  Q
    ||||||||||  ||||||||| || |||| ||  |||| | |||||||| |   |||||||| |||||||||||||| ||||| ||| |||||||||| |    
T  12196740 agacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttaccttgtaagtttttcttcctagccga 12196839  T
Q  276 acactaaactacctcaaactcacagctacggtacagacacgttttctgtcactccaggaattatttggacgatcggaccgttgaaaacgaagaaccgcat 375  Q
    || |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||  ||      ||||||| |||| |||    
T  12196840 actctaaaccacctcaaactcacagctacggtgcagacacgttttctctcactccaggaattattttgacgatcaaac-----gaaacgaaaaaccacat 12196934  T
Q  376 gtcttgaacacgctgtccaaaaattagcccaatcggacggtgaatgaaggtgtagtcacaattctacgatgacaggtttgagaaaaacgaaaat 469  Q
    |    ||||| | | |||||| |||||| | ||||||| ||||| ||||| |||||  ||||||||||||||||||||| || |||||||||||    
T  12196935 gctgagaacatgttttccaaatattagctccatcggaccgtgaacgaaggcgtagttgcaattctacgatgacaggttttaggaaaacgaaaat 12197028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 137 - 265
Target Start/End: Complemental strand, 22077748 - 22077620
Alignment:
Q  137 accatataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggg 236  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | ||||||    
T  22077748 accatataaatttatattttagttgtttttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatggg 22077649  T
Q  237 ggaaaagcccttacctcgtaagctttcct 265  Q
      ||||||||||||||| |||||||||||    
T  22077648 aaaaaagcccttacctcataagctttcct 22077620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 48654369 - 48654522
Alignment:
Q  143 taaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaa 242  Q
    ||||| ||||||||||||||||||| |  ||| |||||||||| | |||  |||||||| || |||||||||||||||||||||| ||||||||| ||||    
T  48654369 taaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatggggaaaaa 48654468  T
Q  243 gcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactc 296  Q
     ||||||||||| |||||||  ||||||||| ||| |||||| |||||||||||    
T  48654469 acccttacctcgaaagcttttgttcctagccgaactctaaaccacctcaaactc 48654522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 10289388 - 10289474
Alignment:
Q  210 tcctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactc 296  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 10289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 15874070 - 15874186
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |  ||||||    
T  15874070 accatatgaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatg 15874169  T
Q  235 ggggaaaagcccttacc 251  Q
    ||| |||||||||||||    
T  15874170 gggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 21491629 - 21491732
Alignment:
Q  137 accatataaatttatattttagttgtttt----tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgta 232  Q
    |||||||||||| ||||||||||| ||||    || | ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  21491629 accatataaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacatcatcctagtacttagtatggacgta 21491728  T
Q  233 tggg 236  Q
    ||||    
T  21491729 tggg 21491732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 48576446 - 48576332
Alignment:
Q  137 accatataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggg 236  Q
    |||||||||||| |||||||| || |||| | | | ||| || ||||||||||||| ||||||||||| || |||| |||||||||||||| ||||||||    
T  48576446 accatataaattcatattttaattatttt-ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggg 48576348  T
Q  237 ggaaaagcccttacct 252  Q
    | ||||||||||||||    
T  48576347 gaaaaagcccttacct 48576332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 46002990 - 46003087
Alignment:
Q  343 gacgatcggaccgttgaaaacgaagaaccgcatgtcttgaacacgctgtccaaaaattagcccaatcggacggtgaatgaaggtgtagtcacaattct 440  Q
    ||||||||||| ||||||||||||||||| |||||  ||||||| ||||| ||||||||||||||||  | ||| || ||| ||| ||||||||||||    
T  46002990 gacgatcggactgttgaaaacgaagaaccacatgttgtgaacactctgtctaaaaattagcccaatcaaatggtaaacgaaagtgcagtcacaattct 46003087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 18367495 - 18367577
Alignment:
Q  171 tcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagcccttacctc 253  Q
    |||||| |||||||||||||||  |||||||||| ||| ||||||| |||| ||||| ||||| ||| |||||||||||||||    
T  18367495 tcaacaaacaagaatctctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacctc 18367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 7503946 - 7503909
Alignment:
Q  215 gtacttagtatggtcgtatgggggaaaagcccttacct 252  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacct 7503909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 137 - 369
Target Start/End: Complemental strand, 16975371 - 16975129
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||||| ||||||||||||||| ||||||||||| || ||||||||||||| || |   |||||    
T  16975371 accatatgaattcatattttagttgttttgttcttttcaacaaacaagaatctctacctctaattcataacataatcctagtacttattaagaatgtatg 16975272  T
Q  235 gggg-aaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctc-------aaactcacagctacggtacagacacgttttctgtca 326  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||    
T  16975271 gggggaaaagcccttacctcgtaagcttttcttcctagccaaacactaaactacctcaaacctcaaactcacagctacggtacagacacattttctgtca 16975172  T
Q  327 ctccaggaattatttggacgatcggaccgttgaaaacgaagaa 369  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  16975171 ctccaggaattattttgacgattggaccgttgaaaacgaagaa 16975129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 7337291 - 7337377
Alignment:
Q  210 tcctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactc 296  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  7337291 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 7337377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 5004853 - 5004970
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    |||||||||||| ||||||||||||||||  || | |||| ||||||||||||||||| ||||||||||| || |||||||||||||||| |  ||||||    
T  5004853 accatataaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatg 5004952  T
Q  235 ggggaaaagcccttacct 252  Q
    ||| ||||||||||||||    
T  5004953 gggaaaaagcccttacct 5004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 11968077 - 11968180
Alignment:
Q  199 tcataatatcatcctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcac 298  Q
    |||||| |||||||||||||||||||||| ||||||||  |||| |||||||||||  | |||| |||||||||||||| |||||| |||||||||||||    
T  11968077 tcataacatcatcctagtacttagtatggacgtatgggaaaaaa-cccttacctcgagaacttttcttcctagccaaactctaaaccacctcaaactcac 11968175  T
Q  299 agcta 303  Q
    |||||    
T  11968176 agcta 11968180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 46404695 - 46404814
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || |||||||||||||||| |  ||||||    
T  46404695 accatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatg 46404794  T
Q  235 ggg-gaaaagcccttacctc 253  Q
    |||  |||||||||||||||    
T  46404795 gggaaaaaagcccttacctc 46404814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 11968244 - 11968332
Alignment:
Q  381 gaacacgctgtccaaaaattagcccaatcggacggtgaatgaaggtgtagtcacaattctacgatgacaggtttgagaaaaacgaaaat 469  Q
    ||||||||||||||| ||||||| ||||| ||| ||||| ||||  |||||| |||||||||||||||||||||||  ||||| |||||    
T  11968244 gaacacgctgtccaataattagctcaatcagacagtgaacgaagccgtagtcgcaattctacgatgacaggtttgaagaaaacaaaaat 11968332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 16475381 - 16475278
Alignment:
Q  151 tattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagccctt 248  Q
    |||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || ||| |||||||||||| |  ||||||||| |||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  249 acct 252  Q
    ||||    
T  16475281 acct 16475278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 211 - 469
Target Start/End: Complemental strand, 8421615 - 8421357
Alignment:
Q  211 cctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcacagctacggtaca 310  Q
    ||||| ||||||||||  ||||||||| |||||||||||||| |  |||||| ||| |||| | ||| |||||| ||||||||||||||||||||||  |    
T  8421615 cctagcacttagtatgtacgtatggggaaaaagcccttaccttgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaa 8421516  T
Q  311 gacacgttttctgtcactccaggaattatttggacgatcggaccgttgaaaacgaagaaccgcatgtcttgaacacgctgtccaaaaattagcccaatcg 410  Q
    |||| | ||||| ||| ||||||| ||| || ||||| ||||||||||||| |||||||||||||||   ||||||||||||||||||| ||| ||||||    
T  8421515 gacatggtttctctcagtccaggagttagtttgacgaccggaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaatgagctcaatcg 8421416  T
Q  411 gacggtgaatgaaggtgtagtcacaattctacgatgacaggtttgagaaaaacgaaaat 469  Q
    ||||||||| ||||| ||| || |||||||||||||||| ||||||| |||||||||||    
T  8421415 gacggtgaacgaaggcgtaatcgcaattctacgatgacatgtttgaggaaaacgaaaat 8421357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 9537492 - 9537602
Alignment:
Q  140 atataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggggga 239  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||| |||||| || |    
T  9537492 atataaatttatattttacttgtttttcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcagtatggacgtatgaggta 9537591  T
Q  240 aaagcccttac 250  Q
    |||||||||||    
T  9537592 aaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 35762185 - 35762303
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    |||||||||||| ||||||||||||||||  || | |||||| ||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||    
T  35762185 accatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtatggacgtatg 35762284  T
Q  235 ggggaaaagcccttacctc 253  Q
    ||| |||||||||||||||    
T  35762285 gggaaaaagcccttacctc 35762303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 18473834 - 18473919
Alignment:
Q  56 tttctccgggaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagcaaccatataa 145  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18473834 tttctccgggaaataata--gtcacatatatactataataaaattaaacatt--ttaatttatccaggaagaatttcagcaaccatataa 18473919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 21264799 - 21264884
Alignment:
Q  211 cctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactc 296  Q
    ||||| |||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  21264799 cctagcacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 21264884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 37667285 - 37667412
Alignment:
Q  139 catataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggg 236  Q
    ||||| |||| ||||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || |||||| ||||||||| |  ||||||||    
T  37667285 catatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctattacttagtaagaacgtatggg 37667384  T
Q  237 ggaaaagcccttacctcgtaagctttcct 265  Q
    | ||||| ||||||||| |||||||||||    
T  37667385 gaaaaag-ccttacctcataagctttcct 37667412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 16074826 - 16074710
Alignment:
Q  139 catataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatat---catcctagtacttagtatggtcgtatgg 235  Q
    ||||| |||| |||||||| ||||||||| | | ||| ||||| |||||||| | ||||||||||||||   ||||| |||||||||||||  |||||||    
T  16074826 catatgaattcatattttaattgtttttctttttaacggacaaaaatctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgg 16074727  T
Q  236 gggaaaagcccttacct 252  Q
    |  ||||||||||||||    
T  16074726 gaaaaaagcccttacct 16074710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 338100 - 338047
Alignment:
Q  212 ctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttcct 265  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  338100 ctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttcct 338047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 43407964 - 43408031
Alignment:
Q  210 tcctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaac 277  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||  |||||| |||||||| |||||    
T  43407964 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctagtcaaac 43408031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 33007968 - 33008019
Alignment:
Q  36 aaaataacactacaagcatttttctccgggaaataatatagtcacatatatac 88  Q
    |||||||||| ||||| |||||||||| |||||||||||||| ||||||||||    
T  33007968 aaaataacaccacaagtatttttctccaggaaataatatagt-acatatatac 33008019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 13773667 - 13773801
Alignment:
Q  10 aagaatatataggcacatatatgctaaaaataacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacattta 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  13773667 aagaatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactataataaaattaaa-attta 13773765  T
Q  110 ttaatttatccaggaagaatttcagcaaccatataa 145  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13773766 ttaatttattcaggaagaatttcagcaaccatataa 13773801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 10751623 - 10751776
Alignment:
Q  200 cataatatcatcctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcaca 299  Q
    ||||| || ||| |||||||||||| |   |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10751623 cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacctcgtaagctttcattcctagccaaacactaaactacctcaaactcaca 10751722  T
Q  300 gctacggtacagacacgttttctgtcactccaggaattatttggacgatcggac 353  Q
    ||||| || || |||||||||||||||||||||||||||||| |||||||||||    
T  10751723 gctactgttcaaacacgttttctgtcactccaggaattattttgacgatcggac 10751776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 144 - 296
Target Start/End: Original strand, 13777241 - 13777393
Alignment:
Q  144 aaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaag 243  Q
    |||| ||||||||||||||||||| |  ||| ||| |||||| | |||  |||||||| || |||||||||||| ||| ||||| |||| |||| |||||    
T  13777241 aaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaag 13777340  T
Q  244 cccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactc 296  Q
     ||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13777341 tccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 13777393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 34636304 - 34636188
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || |||||||||||||||| |  ||||||    
T  34636304 accatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatg 34636205  T
Q  235 ggggaaaagcccttacc 251  Q
    ||| |||||||||||||    
T  34636204 gggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 23260711 - 23260829
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||| ||||||||||||||||| ||||||||||| || |||||| ||||||||| |  ||||||    
T  23260711 accatatgaattcatattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataacataatcctaatacttagtaagaacgtatg 23260810  T
Q  235 ggggaaaagcccttacctc 253  Q
    ||| |||||||||||||||    
T  23260811 gggaaaaagcccttacctc 23260829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  154 tttagttgtttttcct-ctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagcccttacc 251  Q
    ||||||||||||| || ||||||| ||||||||||||| | ||||||||||| ||||||||| |||||||||||| | ||||||| |||||||||||||    
T  26182602 tttagttgttttttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 32450396 - 32450530
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||||||||||||||||||||| ||||||||||| |  |||||||||||||||| |  ||||      
T  32450396 accatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacacaatcctagtacttagtaagaacgta-c 32450494  T
Q  235 ggggaaaagcccttacctcgtaagctttccttccta 270  Q
    |||||||||||||||||| | | | |||||||||||    
T  32450495 ggggaaaagcccttaccttgcatgttttccttccta 32450530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 25005261 - 25005144
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| ||||  |||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || ||| |||||||||||| |  ||||||    
T  25005261 accatatgaattcttattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatg 25005162  T
Q  235 ggggaaaagcccttacct 252  Q
    ||| |||| | |||||||    
T  25005161 gggaaaaaactcttacct 25005144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 11166587 - 11166662
Alignment:
Q  177 gacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagcccttacct 252  Q
    ||||| |||||||||||||| |||||||||  ||||||  |||||||| |  ||||||||| ||||||||||||||    
T  11166587 gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttacct 11166662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 12774658 - 12774790
Alignment:
Q  13 aatatataggcacatatatgctaaaaataacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttatta 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  12774658 aatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactatgataaatttaagcatttatta 12774757  T
Q  113 atttatccaggaagaatttcagcaaccatataa 145  Q
    |||||||||||||||||||||||||||||||||    
T  12774758 atttatccaggaagaatttcagcaaccatataa 12774790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 28267398 - 28267531
Alignment:
Q  13 aatatataggcacatatat-gctaaaaataacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttatt 111  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||    
T  28267398 aatatatagccacatatattgctaaaaataacactacaagcatttttctacaggaaataatatagtcacatatatactataatagatttaaacatttatt 28267497  T
Q  112 aatttatccaggaagaatttcagcaaccatataa 145  Q
    ||||||||||||||||||||||||||||||||||    
T  28267498 aatttatccaggaagaatttcagcaaccatataa 28267531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 137 - 296
Target Start/End: Original strand, 32735425 - 32735586
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||  ||||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || ||||||| |||||||| |  ||||||    
T  32735425 accatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagcacttagtaagaacgtatg 32735524  T
Q  235 ggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactc 296  Q
    ||| ||||||||||||||||  |||||| |||||||||| ||| |||||| |||||||||||    
T  32735525 gggaaaaagcccttacctcgagagcttttcttcctagccgaactctaaaccacctcaaactc 32735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 242 - 440
Target Start/End: Complemental strand, 22403757 - 22403559
Alignment:
Q  242 agcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcacagctacggtacagacacgttttctgtcactccaggaattattt 341  Q
    |||||||||||||  | |||| |||||||||| ||| |||||| |||| ||||||||||||||||| |||||||| ||||| || ||||||  |||| ||    
T  22403757 agcccttacctcgagatcttttcttcctagccgaactctaaaccaccttaaactcacagctacggtgcagacacgatttctctcgctccagtcattaatt 22403658  T
Q  342 ggacgatcggaccgttgaaaacgaagaaccgcatgtcttgaacacgctgtccaaaaattagcccaatcggacggtgaatgaaggtgtagtcacaattct 440  Q
     ||||||| | |||||||||| ||||||| ||||||    |||| |||| |||||||||||| |||| | |||||||| ||||| |||| |||||||||    
T  22403657 tgacgatcaggccgttgaaaatgaagaactgcatgttgcaaacatgctgcccaaaaattagctcaattgaacggtgaacgaaggcgtagacacaattct 22403559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 36732566 - 36732689
Alignment:
Q  286 acctcaaactcacagctacggtacagacacgttttctgtcactccaggaattatttggacgatcggaccgttgaaaacgaagaaccgcatgtcttgaaca 385  Q
    |||||||||||| | |||| || ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    |||||    
T  36732566 acctcaaactcataactactgtgcagacacattttctctcactccaggaattattttgacgatcggaccgttgaaaacgaagaaccacatgcgaagaaca 36732665  T
Q  386 cgctgtccaaaaattagcccaatc 409  Q
     |||| ||||||||||||||||||    
T  36732666 tgctgcccaaaaattagcccaatc 36732689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 217 - 367
Target Start/End: Original strand, 41340858 - 41341006
Alignment:
Q  217 acttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcacagctacggtacagacacg 316  Q
    ||||||||||| ||||||||  |||||||||||||| |  |||||| |||||||| | ||| |||||| |||||||||||||| |||||||  |||||||    
T  41340858 acttagtatggacgtatggga-aaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacaactacggttaagacacg 41340956  T
Q  317 ttttctgtcactccaggaattatttggacgatcggaccgttgaaaacgaag 367  Q
    |||||| |||||||| ||||||||| ||||   |||| |||||||||||||    
T  41340957 ttttctctcactccaagaattattt-gacggatggacggttgaaaacgaag 41341006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 12774947 - 12775056
Alignment:
Q  143 taaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaa 242  Q
    ||||| ||||||||||||||||||| |  ||| ||| |||||| | |||  |||||||| || ||||||||||||||| |||||| ||||||||| ||||    
T  12774947 taaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaa 12775046  T
Q  243 gcccttacct 252  Q
    ||||||||||    
T  12775047 gcccttacct 12775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 28267685 - 28267778
Alignment:
Q  143 taaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggg 236  Q
    ||||| ||||||||||||||||||| | |||| ||| |||||| | |||  |||||||| || |||||||||||||||||||||| ||||||||    
T  28267685 taaatatatattttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatggg 28267778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 40447473 - 40447420
Alignment:
Q  212 ctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttcct 265  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  40447473 ctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttcct 40447420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 42861198 - 42861102
Alignment:
Q  49 aagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagcaaccatataa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42861198 aagcatttttctccgggaaataatatagtcacatatatactataatataattaaacatttattaatttatccaggaagaatttcagcaaccatataa 42861102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 536847 - 536731
Alignment:
Q  137 accatataaatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatg 234  Q
    ||||||| |||| ||||||||||||||||  || | |||||||||||||||||||||| ||||||||||| || |||||||||||||||| |  ||||||    
T  536847 accatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatg 536748  T
Q  235 ggggaaaagcccttacc 251  Q
    ||| |||||||||||||    
T  536747 gggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 4558105 - 4558243
Alignment:
Q  137 accatataaatttatattttagttgtttt---tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtat 233  Q
    |||||||||||| ||||||||||| ||||   || |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||| | |||||    
T  4558105 accatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttagtatagacgtat 4558204  T
Q  234 gggggaaaagcccttacctcgtaagctttccttcctagcc 273  Q
     ||| |||||||||||||||||| | ||| | ||||||||    
T  4558205 -gggaaaaagcccttacctcgtacgttttacctcctagcc 4558243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 145 - 342
Target Start/End: Complemental strand, 8949 - 8748
Alignment:
Q  145 aatttatattttagttgtttt--tcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaa 242  Q
    |||| ||||||||||||||||  || | ||||||||||||||| | |||| ||||||||||| || |||||||||||||||| |  ||||||||| ||||    
T  8949 aattcatattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaa 8850  T
Q  243 gcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcaca--gctacggtacagacacgttttctgtcactccaggaattatt 340  Q
    ||||||||||||  |||||| |||||||||||||| |||||| | |||||| |||||  ||||| || |||||||||||||  | |||||||||||||||    
T  8849 gcccttacctcgagagcttttcttcctagccaaactctaaaccaactcaaagtcacagcgctactgtgcagacacgttttcactaactccaggaattatt 8750  T
Q  341 tg 342  Q
    ||    
T  8749 tg 8748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 28969316 - 28969431
Alignment:
Q  137 accatataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggg 236  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||| |    
T  28969316 accatataaattaatattttagttgtttttcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttagtatggacgtatgag 28969415  T
Q  237 ggaaaagcccttacct 252  Q
    | |||| |||||||||    
T  28969416 gaaaaaacccttacct 28969431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 287 - 423
Target Start/End: Original strand, 42900730 - 42900866
Alignment:
Q  287 cctcaaactcacagctacggtacagacacgttttctgtcactccaggaattatttggacgatcggaccgttgaaaacgaagaaccgcatgtcttgaacac 386  Q
    ||||||||||||||| ||  | ||||| | |||||| ||||||||| ||||||||||| |||||||| ||||||||| ||||||| ||| |   |||||     
T  42900730 cctcaaactcacagccacaatgcagactcattttctctcactccagaaattatttggatgatcggacagttgaaaacaaagaaccacatattgagaacat 42900829  T
Q  387 gctgtccaaaaattagcccaatcggacggtgaatgaa 423  Q
    | |||||||||| |||||||| |  ||||||||||||    
T  42900830 gttgtccaaaaactagcccaaacaaacggtgaatgaa 42900866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 268
Target Start/End: Complemental strand, 69352 - 69235
Alignment:
Q  150 atattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagccctta 249  Q
    |||||||| ||||||||| | |||| ||||||||||  ||||||||| || |||| |   |||||  ||||||||||| ||||||||  |||| ||||||    
T  69352 atattttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaaa-ccctta 69254  T
Q  250 cctcgtaagctttccttcc 268  Q
    |||||||||||||||||||    
T  69253 cctcgtaagctttccttcc 69235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 49499126 - 49499045
Alignment:
Q  140 atataaatttatattttagttgttttt--cctctcaacagacaagaatctctaccactaattcataatatcatcctagtact 219  Q
    ||||||||| ||||||||||| |||||  | |||||||||||||||||||| ||| ||||||||||| || |||||||||||    
T  49499126 atataaattcatattttagttttttttttcttctcaacagacaagaatctccacctctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 41868684 - 41868552
Alignment:
Q  137 accatataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatggg 236  Q
    ||||| ||||| ||||||| | |||||| || | |||| |||||||||| |||||  |||||||| || ||||||||| |||||||||||| ||||| ||    
T  41868684 accatgtaaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtat-gg 41868586  T
Q  237 ggaaaagcccttacctcgtaagctttccttccta 270  Q
    | |||||| ||||||| ||  |||||| ||||||    
T  41868585 gaaaaagcacttaccttgtgtgctttcattccta 41868552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 40458946 - 40458881
Alignment:
Q  212 ctagtacttagtatggtcgtatgggggaaaagcccttacctcgtaagctttccttcctagccaaac 277  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||  |||||| |||||||| |||||    
T  40458946 ctagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctagtcaaac 40458881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 505
Target Start/End: Complemental strand, 24423142 - 24422975
Alignment:
Q  338 atttggacgatcggaccgttgaaaacgaagaaccgcatgtcttgaacacgctgtccaaaaattagcccaatcggacggtgaatgaaggtgtagtcacaat 437  Q
    |||| |||||||||||| ||||||||||||||||  |||     |||| ||||| ||||||||||| |||||| | ||||||  ||||||||||| ||||    
T  24423142 attttgacgatcggacctttgaaaacgaagaaccaaatggtggaaacatgctgttcaaaaattagcgcaatcgaatggtgaacaaaggtgtagtcccaat 24423043  T
Q  438 tctacgatgaca-ggtttgagaaaaacgaaaatagttccaatgagacattattctaggattagagattg 505  Q
    |||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  24423042 tctacggtgacatggttagagaaaa-cgaaaatagctccaatgagacattattctaggattagagattg 24422975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 35839122 - 35839004
Alignment:
Q  231 tatgggggaaaagcccttacctcgtaagctttccttcctagccaaacactaaactacctcaaactcacagctacggtacagacacgttttctgtcactcc 330  Q
    ||||||| |||||| |||| ||||  |||||| |||||||| ||||| |||||| |||||||| ||||| ||| ||| |||||||||||||| ||||||     
T  35839122 tatggggaaaaagctcttagctcgagagcttttcttcctagtcaaactctaaaccacctcaaagtcacaactatggtgcagacacgttttctctcactct 35839023  T
Q  331 aggaattatttggacgatc 349  Q
    ||| ||||||| |||||||    
T  35839022 agggattattttgacgatc 35839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 22816487 - 22816609
Alignment:
Q  150 atattttagttgtttttcctctcaacagacaagaatctctaccactaattcataatatcatcctagtacttagtatggtcgtatgggggaaaagccctta 249  Q
    |||||||| ||||||||| | |||| ||||||||||  | ||||||| || |||| |   |||||  |||||| | |  ||||||||| |||||||||||    
T  22816487 atattttaattgtttttcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagccctta 22816586  T
Q  250 cctcgtaagctttccttcctagc 272  Q
    |||||  ||||||||||||||||    
T  22816587 cctcgagagctttccttcctagc 22816609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 291 - 224
Alignment:
Q  137 accatataaatttatattttagttgtttttcctctcaacagacaagaatctctaccactaattcataa 204  Q
    |||||||| |||||||||||| || |||||| | | |||| ||||||||||||| | |||||||||||    
T  291 accatatagatttatattttaattatttttctttttaacaaacaagaatctctatctctaattcataa 224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University