View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_19 (Length: 477)
Name: NF18317_low_19
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_19 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 19969921 - 19970371
Alignment:
| Q |
13 |
aatatcacaagtgttaatctcaaaatagataaattcaagtaaaagaggatgccgcatataccatacccaaaatacatatagacgttgcacattataaact |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19969921 |
aatatcacaagtgttaatgtcaaaatagataaattcaagtaaaagaggatgccgcatataccatacccaaaatacatatagacgttgcacattataaact |
19970020 |
T |
|
| Q |
113 |
gctctaagcggaacttcgaataaattgatatctgcattgatcaatttggataagggtttaaaataccctcccgctgtaacaccggcatttgcatcaacac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19970021 |
gctctaagcggaacttcgaataaattgatatctgcattgatcaatttggataagggtttaaaataccctcccgctgtaacatcggcatttgcatcaacac |
19970120 |
T |
|
| Q |
213 |
atatagttttcaaattctccaacatgggacaccccgaaagaagtttcatgagatccttcatatcttcaaaacttacaaaacacatataaagggttttgag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19970121 |
atatagttttcaaattctccaacatgggacaccccgaaaaaagtttcatgagatccttcatatcttcaaaacttacaaaacacatataaagggttttgag |
19970220 |
T |
|
| Q |
313 |
cgaaggaagatcaacagaagaacgaaacatagtggttacatgtatgctaaacaatttcagaaccacaagtgtttca-agcagaaaatggtaggcgccaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19970221 |
cgaaggaagatcaacagaagaacgaaacatagttgttacatgtatgctaaacaatttcagaaccacaagtgtttcacagcagaaaatggtaggcgccaaa |
19970320 |
T |
|
| Q |
412 |
gatttgttttttggtaggtataggtagagtttttcaacgcggcgttgtttt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19970321 |
gatttgttttttggtaggtataggtagagtttttcaacgcagcgttgtttt |
19970371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 19805942 - 19805774
Alignment:
| Q |
101 |
acattataaactgctctaagcggaacttcgaataaattgatatctgcattgatcaatttggataagggtttaaaataccctcccgctgtaacaccggcat |
200 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||||| | ||||| |||||| |||| |||||||||| |||||| | |||||||| ||||||| || |
|
|
| T |
19805942 |
acattataaattgctctgaacggaaggtcgaataatcttatatcagcattgttcaacttggataaggatttaaagttccctcccgttgtaacattggttg |
19805843 |
T |
|
| Q |
201 |
ttgcatcaacacatatagttttcaaattctccaacatgggacaccccgaaagaagtttcatgagatcct |
269 |
Q |
| |
|
||| | |||| || ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19805842 |
ttgttttaacatatctagttttcaaattctccaatatgggacacccagaaagaagtttcatgaaatcct |
19805774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 352
Target Start/End: Original strand, 1348348 - 1348484
Alignment:
| Q |
216 |
tagttttcaaattctccaacatgggacaccccgaaagaagtttcatgagatccttcatatcttcaaaacttacaaaacacatataaagggttttgagcga |
315 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||| | ||| ||||||| ||||| |||||||| |
|
|
| T |
1348348 |
tagttttcaaattctccaattgaggacacccagacagaagtttcatgagatccttcttatcttcaaaccgaacagaacacatgcaaaggattttgagcat |
1348447 |
T |
|
| Q |
316 |
aggaagatcaacagaagaacgaaacatagtggttaca |
352 |
Q |
| |
|
|||||||| ||| ||| ||||||||| ||| ||||| |
|
|
| T |
1348448 |
aggaagatgaaccgaactacgaaacatggtgtttaca |
1348484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 13712824 - 13712942
Alignment:
| Q |
229 |
ctccaacatgggacaccccgaaagaagtttcatgagatccttcatatcttcaaaacttacaaaacacatataaagggttttgagcgaaggaagatcaaca |
328 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||||| ||| |||||||||||||| || || | | |||| ||||||||||| ||||||||| || | |
|
|
| T |
13712824 |
ctccaatatgggacacccagagagaaggttcatgaaatctttcatatcttcaaattgaactgaagatagataacgggttttgagcaaaggaagattaata |
13712923 |
T |
|
| Q |
329 |
gaagaacgaaacatagtgg |
347 |
Q |
| |
|
||| || |||||||||||| |
|
|
| T |
13712924 |
gaacaatgaaacatagtgg |
13712942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 1348221 - 1348296
Alignment:
| Q |
101 |
acattataaactgctctaagcggaacttcgaataaattgatatctgcattgatcaatttggataagggtttaaaat |
176 |
Q |
| |
|
||||||||||||||||| | ||||| || ||||||| ||| | || |||||||| ||||||||||||||||||| |
|
|
| T |
1348221 |
acattataaactgctctgaacggaatatcaaataaatggattttggccttgatcaacttggataagggtttaaaat |
1348296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 17383420 - 17383369
Alignment:
| Q |
153 |
tcaatttggataagggtttaaaataccctcccgctgtaacaccggcatttgc |
204 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
17383420 |
tcaatttggataagtgtttaaagtaccctccatctggaacaccggcatttgc |
17383369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 20111472 - 20111410
Alignment:
| Q |
149 |
ttgatcaatttggataagggtttaaaataccctcccgctgtaacaccggcatttgcatcaaca |
211 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||| |||||||||||||||| || |||||| |
|
|
| T |
20111472 |
ttgatcaagttggacaagggtttaaagtaccctctttctgtaacaccggcattagcttcaaca |
20111410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 40192 - 40074
Alignment:
| Q |
287 |
acaaaacacatataaagggttttgagcgaaggaagatcaacagaagaacgaaacatagtggttacatgtatgctaaacaatttcagaaccacaagtgttt |
386 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||||||||||| ||| | ||| |||||| || ||||| || ||| |||||| || ||||||||||||| |
|
|
| T |
40192 |
acaaaacacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgttt |
40093 |
T |
|
| Q |
387 |
caagca-gaaaatggtagg |
404 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
40092 |
cacacacgaaaatggtagg |
40074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 33760 - 33722
Alignment:
| Q |
98 |
tgcacattataaactgctctaagcggaacttcgaataaa |
136 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33760 |
tgcacattataaactgctctaaaaggaacttcgaataaa |
33722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 32225231 - 32225325
Alignment:
| Q |
97 |
ttgcacattataaactgctctaagcggaacttcgaataaattgatatctgcattgatcaatttggataagggtttaaaataccctcccgctgtaa |
191 |
Q |
| |
|
|||||||||| ||||| |||| |||||||| ||||||||| ||||| || || ||||| ||||||||||||||| | |||||||| ||||||| |
|
|
| T |
32225231 |
ttgcacattagaaactactctgagcggaacatcgaataaacggatattagctttaatcaacttggataagggtttagagtaccctccagctgtaa |
32225325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 15784313 - 15784254
Alignment:
| Q |
150 |
tgatcaatttggataagggtttaaaataccctcccgctgtaacaccggcatttgcatcaa |
209 |
Q |
| |
|
||||||| |||||||| || ||||| |||||| ||||||||| |||||||||||| |||| |
|
|
| T |
15784313 |
tgatcaagttggataacgggttaaagtacccttccgctgtaataccggcatttgcttcaa |
15784254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University