View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_29 (Length: 434)

Name: NF18317_low_29
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_29
NF18317_low_29
[»] chr2 (20 HSPs)
chr2 (167-418)||(10981682-10981934)
chr2 (13-122)||(10981453-10981562)
chr2 (75-119)||(33678254-33678298)
chr2 (78-122)||(45554567-45554611)
chr2 (75-122)||(15508911-15508958)
chr2 (75-122)||(18511345-18511392)
chr2 (75-122)||(19193497-19193544)
chr2 (152-186)||(33678264-33678298)
chr2 (73-122)||(1110193-1110242)
chr2 (70-111)||(12989183-12989224)
chr2 (149-186)||(12989188-12989225)
chr2 (81-122)||(12989329-12989370)
chr2 (150-187)||(12989340-12989377)
chr2 (70-111)||(20951598-20951639)
chr2 (75-112)||(32856285-32856322)
chr2 (70-122)||(9470073-9470125)
chr2 (75-119)||(26767900-26767944)
chr2 (150-186)||(32856286-32856322)
chr2 (71-119)||(37398804-37398852)
chr2 (78-122)||(42182889-42182933)
[»] chr7 (30 HSPs)
chr7 (71-122)||(27888275-27888326)
chr7 (68-122)||(31502600-31502654)
chr7 (75-122)||(42863570-42863617)
chr7 (72-114)||(32205073-32205115)
chr7 (74-122)||(27888420-27888468)
chr7 (137-180)||(31502481-31502524)
chr7 (75-122)||(33008101-33008148)
chr7 (74-122)||(13919919-13919967)
chr7 (74-122)||(27949269-27949317)
chr7 (150-186)||(32205076-32205112)
chr7 (72-123)||(2520725-2520776)
chr7 (74-121)||(17354664-17354711)
chr7 (79-122)||(27949411-27949454)
chr7 (71-122)||(48374430-48374481)
chr7 (150-197)||(48374584-48374631)
chr7 (76-122)||(22786149-22786195)
chr7 (150-188)||(42863581-42863619)
chr7 (77-111)||(48374584-48374618)
chr7 (81-122)||(17749833-17749874)
chr7 (73-122)||(19422970-19423019)
chr7 (81-122)||(24539123-24539164)
chr7 (73-122)||(24539259-24539308)
chr7 (73-122)||(30742671-30742720)
chr7 (81-122)||(45909595-45909636)
chr7 (78-114)||(14795131-14795167)
chr7 (78-114)||(15242123-15242159)
chr7 (150-186)||(27888279-27888315)
chr7 (154-186)||(33008101-33008133)
chr7 (71-111)||(46517286-46517326)
chr7 (150-182)||(48374438-48374470)
[»] chr3 (21 HSPs)
chr3 (74-122)||(20493581-20493629)
chr3 (75-122)||(27243042-27243089)
chr3 (75-122)||(28529250-28529297)
chr3 (73-111)||(46160944-46160982)
chr3 (73-122)||(41451888-41451937)
chr3 (73-122)||(52124092-52124141)
chr3 (74-122)||(24734843-24734891)
chr3 (150-186)||(46160946-46160982)
chr3 (75-111)||(46450064-46450100)
chr3 (150-186)||(46450064-46450100)
chr3 (75-122)||(5452196-5452243)
chr3 (79-122)||(52123955-52123998)
chr3 (149-187)||(5452206-5452244)
chr3 (152-186)||(27243197-27243231)
chr3 (72-122)||(38928000-38928050)
chr3 (150-187)||(52951507-52951544)
chr3 (150-186)||(20493592-20493628)
chr3 (150-186)||(28529250-28529286)
chr3 (78-122)||(29389149-29389193)
chr3 (150-186)||(55452160-55452196)
chr3 (75-111)||(55452160-55452196)
[»] chr1 (25 HSPs)
chr1 (72-119)||(25543334-25543381)
chr1 (75-122)||(13388331-13388378)
chr1 (71-122)||(44739111-44739162)
chr1 (72-122)||(11430579-11430629)
chr1 (74-115)||(13889289-13889330)
chr1 (73-122)||(30678904-30678953)
chr1 (78-122)||(3872769-3872813)
chr1 (74-122)||(6133760-6133808)
chr1 (74-122)||(41095602-41095650)
chr1 (75-122)||(11135736-11135783)
chr1 (75-122)||(26980398-26980445)
chr1 (75-122)||(32848719-32848766)
chr1 (72-122)||(13114661-13114711)
chr1 (72-122)||(13114806-13114856)
chr1 (74-120)||(39019571-39019617)
chr1 (76-122)||(46335092-46335138)
chr1 (73-122)||(41948139-41948188)
chr1 (74-122)||(931370-931418)
chr1 (75-111)||(6325957-6325993)
chr1 (74-122)||(10659905-10659953)
chr1 (75-111)||(11851921-11851957)
chr1 (150-186)||(11851921-11851957)
chr1 (150-186)||(13889293-13889329)
chr1 (70-122)||(14093990-14094042)
chr1 (150-186)||(25543337-25543373)
[»] chr8 (16 HSPs)
chr8 (75-121)||(13407318-13407364)
chr8 (73-122)||(8914766-8914815)
chr8 (73-111)||(43506533-43506571)
chr8 (73-122)||(1977309-1977358)
chr8 (77-122)||(31691647-31691692)
chr8 (74-122)||(16983390-16983438)
chr8 (74-122)||(16983532-16983580)
chr8 (71-111)||(34861332-34861372)
chr8 (75-115)||(34952458-34952498)
chr8 (150-186)||(43506535-43506571)
chr8 (73-115)||(1961403-1961445)
chr8 (83-121)||(43121621-43121659)
chr8 (73-122)||(38091489-38091538)
chr8 (82-122)||(5980017-5980057)
chr8 (150-186)||(13407318-13407354)
chr8 (150-186)||(34952458-34952494)
[»] chr4 (19 HSPs)
chr4 (73-122)||(40991725-40991774)
chr4 (73-122)||(53870999-53871048)
chr4 (70-111)||(20225486-20225527)
chr4 (150-187)||(20225486-20225523)
chr4 (73-121)||(2187806-2187854)
chr4 (137-182)||(20225354-20225401)
chr4 (71-123)||(24834571-24834623)
chr4 (79-122)||(8108957-8109000)
chr4 (79-122)||(8109094-8109137)
chr4 (79-122)||(37315564-37315607)
chr4 (149-182)||(19447280-19447313)
chr4 (73-122)||(26361301-26361350)
chr4 (73-114)||(33653633-33653674)
chr4 (137-182)||(50481560-50481605)
chr4 (156-200)||(13070096-13070140)
chr4 (82-122)||(20454676-20454716)
chr4 (74-122)||(40812033-40812081)
chr4 (150-186)||(40991736-40991772)
chr4 (78-114)||(43771126-43771162)
[»] chr6 (13 HSPs)
chr6 (73-122)||(8441973-8442022)
chr6 (73-122)||(8450777-8450826)
chr6 (70-122)||(10060998-10061050)
chr6 (74-122)||(34905332-34905380)
chr6 (152-187)||(12753909-12753944)
chr6 (75-122)||(19090209-19090256)
chr6 (72-122)||(10060853-10060903)
chr6 (75-109)||(12753909-12753943)
chr6 (73-122)||(10133294-10133343)
chr6 (77-122)||(19737431-19737476)
chr6 (81-122)||(29423350-29423391)
chr6 (86-122)||(31116260-31116296)
chr6 (150-182)||(35128870-35128902)
[»] chr5 (11 HSPs)
chr5 (74-122)||(28611914-28611962)
chr5 (75-122)||(34368357-34368404)
chr5 (75-122)||(40971447-40971494)
chr5 (75-122)||(42224727-42224774)
chr5 (73-115)||(4959273-4959315)
chr5 (72-122)||(8622909-8622959)
chr5 (72-118)||(28611770-28611816)
chr5 (152-186)||(40971447-40971481)
chr5 (68-121)||(31542380-31542433)
chr5 (73-113)||(34368507-34368547)
chr5 (70-122)||(40971589-40971641)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 167 - 418
Target Start/End: Original strand, 10981682 - 10981934
Alignment:
Q  167 gagtgttgctagcactcctccatataaaaatggcagttcagaaaacaacaaccccatattttttaagttgaatacaaacaaaacttgtttagttttttaa 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10981682 gagtgttgctagcactcctccatataaaaatggcagttcagaaaacaacaaccccatattttttaagttgaatacaaacaaaacttgtttaattttttaa 10981781  T
Q  267 acagaaacgtcattaaggtacatacaaaggcatgagttgcaata-nnnnnnnctaaaactgatttgaatgtcggtaaaactaattctatactcgaatatg 365  Q
    |||||||||||||||||||||||| | |||||||||||||||||        ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  10981782 acagaaacgtcattaaggtacatatagaggcatgagttgcaatattttttttctaaaactgatttgaatgttgataaaactaattctatactcgaatatg 10981881  T
Q  366 aattaagatactaactcaaatagcaataatcaattttgttatacagctattat 418  Q
    |||||||||||||||||||||| ||||  ||||||||||| |||| |||||||    
T  10981882 aattaagatactaactcaaataacaattgtcaattttgttttacaactattat 10981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 10981453 - 10981562
Alignment:
Q  13 aaaatagatcttatatgcatacaaatggaacaaaatgggcatatatttatgttaatataaaagaggaatgctagcaactctcacttttgaacactctctc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||    
T  10981453 aaaatagatcttatatgcatacaaatggaacaaaatgggcatatatttatgttaatataaaagaggaatgataacaaaactcacttttgaacactctctc 10981552  T
Q  113 taacactcac 122  Q
    ||||||||||    
T  10981553 taacactcac 10981562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 33678298 - 33678254
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacact 119  Q
    |||||||||||||||| |||||||||||||||||| | |||||||    
T  33678298 gaggaatgctagcaacactcacttttgaacactctttataacact 33678254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 45554567 - 45554611
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||    
T  45554567 gaatgctagcaacactcacttttcaacactctctctagcactcac 45554611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 15508911 - 15508958
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||||||||    
T  15508911 gaggaatgttagcaacactctcttttgaacactctttctaacactcac 15508958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 18511392 - 18511345
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||||||||| ||||||||| ||| |||||||    
T  18511392 gaggaatgctagcaacactcactttttaacactctcactatcactcac 18511345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 19193497 - 19193544
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||| ||||| ||||||||||| |||||||||    
T  19193497 gaggaatgctagcaacactctcttttcaacactctctccaacactcac 19193544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 33678264 - 33678298
Alignment:
Q  152 agagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||||||| |||||    
T  33678264 agagtgttcaaaagtgagtgttgctagcattcctc 33678298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 1110193 - 1110242
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||| ||| |||| || || ||||||||||||||||    
T  1110193 aagaggaatgctagcaacactctctttcgagcattctctctaacactcac 1110242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 12989183 - 12989224
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||| |||||||||||||||| ||||||||| ||||||||||    
T  12989183 taaatgaggaatgctagcaacactcacttttcaacactctct 12989224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 12989225 - 12989188
Alignment:
Q  149 aagagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  12989225 aagagagtgttgaaaagtgagtgttgctagcattcctc 12989188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 12989370 - 12989329
Alignment:
Q  81 tgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||| ||| |||||||||||||||||||| ||||||    
T  12989370 tgctagcaacactctcttttgaacactctctctaatactcac 12989329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 12989340 - 12989377
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctcc 187  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  12989340 agagagtgttcaaaagagagtgttgctagcacttctcc 12989377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 20951598 - 20951639
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctct 111  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||    
T  20951598 taaaagaggaatgctagcaacactctcttttgagcactctct 20951639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 32856322 - 32856285
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctc 112  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  32856322 gaggaatgctaacaacactcacttttgaacactctctc 32856285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 9470073 - 9470125
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||| |||||||||||  |||| |||| ||| |||||||||||||||||    
T  9470073 taaaagagaaatgctagcaatactcatttttcaacgctctctctaacactcac 9470125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 26767944 - 26767900
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacact 119  Q
    |||||||||||||||| ||||||||| |||| |||||||| ||||    
T  26767944 gaggaatgctagcaacactcacttttcaacattctctctagcact 26767900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 32856286 - 32856322
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  32856286 agagagtgttcaaaagtgagtgttgttagcattcctc 32856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 37398804 - 37398852
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctctctaacact 119  Q
    |||||||||||||||||||| |||  |||||| || |||||||||||||    
T  37398804 aaaagaggaatgctagcaacactcttttttgagcattctctctaacact 37398852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 42182889 - 42182933
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  42182889 gaatgctagcaacactctcttttgagcactctctctagcactcac 42182933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 27888275 - 27888326
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  27888275 aaaagaggaatgctagcaacactcacttttgagcactctctctaacactcac 27888326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 31502654 - 31502600
Alignment:
Q  68 tataaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  31502654 tataaaagaggaatgctagcaacactcacttttcaacagtctctctaacactcac 31502600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 42863617 - 42863570
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  42863617 gaggaatgctagcaacactcacttttaaacactctctctaacactcac 42863570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 32205073 - 32205115
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctcta 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32205073 aaagaggaatgctagcaacactcacttttgaacactctctcta 32205115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 27888468 - 27888420
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  27888468 agaggaatgctagcaacactctcttttgagcactctctctaacactcac 27888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 31502524 - 31502481
Alignment:
Q  137 atttaaaccaataagagagtgttcaaaagtgagtgttgctagca 180  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  31502524 atttaaaccaataagagagtgtttaaaagagagtgttgctagca 31502481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 33008101 - 33008148
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||    
T  33008101 gaggaatgctagcaacactcacttttgaacactatctctagcactcac 33008148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 13919967 - 13919919
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  13919967 agaggaatgctagcaacactctcttttgagcactctctctagcactcac 13919919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 27949269 - 27949317
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  27949269 agaggaaagctaacaacactcactttttaacactctctctaacactcac 27949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 32205112 - 32205076
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||||||||| |||||    
T  32205112 agagagtgttcaaaagtgagtgttgctagcattcctc 32205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 2520776 - 2520725
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcaca 123  Q
    ||||||||||||||||||| ||| ||||| ||||||||| ||| ||||||||    
T  2520776 aaagaggaatgctagcaacactctcttttcaacactctcactatcactcaca 2520725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 17354711 - 17354664
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactca 121  Q
    ||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  17354711 agaggaatgctagcaacactcttttttgagcactctctctaacactca 17354664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 27949454 - 27949411
Alignment:
Q  79 aatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||    
T  27949454 aatgctagcaacactctcttttgaacactctctctaatactcac 27949411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 48374430 - 48374481
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||| | |||||||||| ||| |||||||||||||||||||| ||||||    
T  48374430 aaaagagtagtgctagcaacactctcttttgaacactctctctaatactcac 48374481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 48374584 - 48374631
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctccatataaaaat 197  Q
    ||||||||||||||||||||||||||||||| ||| ||  ||||||||    
T  48374584 agagagtgttcaaaagtgagtgttgctagcattccaccgaataaaaat 48374631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 22786149 - 22786195
Alignment:
Q  76 aggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  22786149 aggaatgctagcaacactctcttttgagcactctctctagcactcac 22786195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 42863581 - 42863619
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctcca 188  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  42863581 agagagtgtttaaaagtgagtgttgctagcattcctcca 42863619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 48374618 - 48374584
Alignment:
Q  77 ggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||||||||||| ||||||||||||||||||||    
T  48374618 ggaatgctagcaacactcacttttgaacactctct 48374584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 17749874 - 17749833
Alignment:
Q  81 tgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||| ||| |||||| ||||||||||||||||||||    
T  17749874 tgctagcaacactctcttttggacactctctctaacactcac 17749833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 19423019 - 19422970
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| ||||| ||||||| ||||||||| ||||||||||||| |||||||    
T  19423019 aagaagaatgttagcaacactcacttttcaacactctctctatcactcac 19422970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 24539123 - 24539164
Alignment:
Q  81 tgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||| ||| |||||| ||||||||||||||||||||    
T  24539123 tgctagcaacactctcttttggacactctctctaacactcac 24539164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 24539308 - 24539259
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| ||||||||| || ||| |||||| ||||||||||||||||||||    
T  24539308 aagagaaatgctagcgacactctcttttggacactctctctaacactcac 24539259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 30742720 - 30742671
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||||  ||||||||||||| |||| |||||| ||||    
T  30742720 aagaggaatgctagcaacattcacttttgaacattctccctaacattcac 30742671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 45909636 - 45909595
Alignment:
Q  81 tgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||| ||| |||||||| ||||||||||||||||||    
T  45909636 tgctagcaacactctcttttgaatactctctctaacactcac 45909595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 14795131 - 14795167
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctcta 114  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  14795131 gaatgctagcaacactcacttttcaacactctctcta 14795167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 15242123 - 15242159
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctcta 114  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  15242123 gaatgctagcaacactcacttttcaacactctctcta 15242159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 27888315 - 27888279
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||| |||||||||||||||||||||| |||||    
T  27888315 agagagtgctcaaaagtgagtgttgctagcattcctc 27888279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 33008133 - 33008101
Alignment:
Q  154 agtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||||| |||||    
T  33008133 agtgttcaaaagtgagtgttgctagcattcctc 33008101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 46517286 - 46517326
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||| ||||||||||||| ||||||||| ||||||||||    
T  46517286 aaaagatgaatgctagcaacactcactttttaacactctct 46517326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 48374470 - 48374438
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcact 182  Q
    |||||||||||||||| ||||||||||||||||    
T  48374470 agagagtgttcaaaagagagtgttgctagcact 48374438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 20493629 - 20493581
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  20493629 agaggaatgctagcaacactcacttttcaacactctctctaacactcac 20493581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 27243042 - 27243089
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  27243042 gagggatgctagcaacactctcttttgaacactctctctaacactcac 27243089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 28529250 - 28529297
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  28529250 gaggaatgctagcaacactcacttttcaacactctctctagcactcac 28529297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 46160944 - 46160982
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  46160944 aagaggaatgctagcaacactcacttttgaacactctct 46160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 41451888 - 41451937
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| |||||||||||| ||| |||||||||||||||||||| ||||||    
T  41451888 aagagcaatgctagcaacactctcttttgaacactctctctaatactcac 41451937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 52124141 - 52124092
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||| ||||||||| ||| ||||||||| |||||||    
T  52124141 aagaggaatgctagcaacactcactttttaacgctctctctagcactcac 52124092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 24734891 - 24734843
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| |||||||||||| ||| |||||||||||||||||||| ||||||    
T  24734891 agagcaatgctagcaacactctcttttgaacactctctctaatactcac 24734843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 46160982 - 46160946
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46160982 agagagtgttcaaaagtgagtgttgctagcattcctc 46160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 46450064 - 46450100
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46450064 gaggaatgctagcaacactcacttttgaacactctct 46450100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 46450100 - 46450064
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46450100 agagagtgttcaaaagtgagtgttgctagcattcctc 46450064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 5452243 - 5452196
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||||||||| |||||||||| ||||| ||||    
T  5452243 gaggaatgctagcaacactcacttttcaacactctctttaacattcac 5452196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 52123955 - 52123998
Alignment:
Q  79 aatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||    
T  52123955 aatgctagcaacactctcttttgaacactctctctaatactcac 52123998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 5452206 - 5452244
Alignment:
Q  149 aagagagtgttcaaaagtgagtgttgctagcactcctcc 187  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  5452206 aagagagtgttgaaaagtgagtgttgctagcattcctcc 5452244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 27243197 - 27243231
Alignment:
Q  152 agagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||||||| ||||||||||||||||||||    
T  27243197 agagtgttcaaaagagagtgttgctagcactcctc 27243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 38928000 - 38928050
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| ||||||||||||| ||| ||||||| |||| ||||||||||||||    
T  38928000 aaagaagaatgctagcaacactctcttttgatcactttctctaacactcac 38928050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 52951507 - 52951544
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctcc 187  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  52951507 agagagtgttaaaaagagagtgttgctagcactcctcc 52951544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 20493592 - 20493628
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||| |||||||||||||||||||| |||||    
T  20493592 agagagtgttgaaaagtgagtgttgctagcattcctc 20493628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 28529286 - 28529250
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||| |||||||||||||||||||| |||||    
T  28529286 agagagtgttgaaaagtgagtgttgctagcattcctc 28529250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 29389193 - 29389149
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||| ||||||||||| ||||| || ||||||||||    
T  29389193 gaatgctagcaacactcacttttgagcactcactttaacactcac 29389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 55452160 - 55452196
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||||||||||||||||||||| || |||||    
T  55452160 agagagtgttcaaaagtgagtgttgctaacattcctc 55452196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 55452196 - 55452160
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  55452196 gaggaatgttagcaacactcacttttgaacactctct 55452160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 25543334 - 25543381
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacact 119  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  25543334 aaagaggaatgctagcaacactcacttttaaacactctctctaacact 25543381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 13388331 - 13388378
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  13388331 gaggaatgctagcaacactctcttttgaatactctctctaacactcac 13388378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 44739111 - 44739162
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||| |||||||    
T  44739111 aaaagaggaatgttagcaacactctcttttgaacactctctctagcactcac 44739162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 11430629 - 11430579
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  11430629 aaagaggaatgctagcaacactctcttttgagcactctctctagcactcac 11430579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 13889330 - 13889289
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaa 115  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  13889330 agaggaatgctagcaacactctcttttgaacactctctctaa 13889289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 30678904 - 30678953
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||||||    
T  30678904 aagaggaatgctagcaacactcttttttgagcactctctctaacactcac 30678953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 3872813 - 3872769
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||    
T  3872813 gaatgctagcaacactcacttttcaacactctctctagcactcac 3872769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 6133808 - 6133760
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||||||||| |||| |||||||| |||||||    
T  6133808 agaggaatgctagcaacactcacttttcaacaatctctctagcactcac 6133760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 41095602 - 41095650
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  41095602 agaggaatgctagcaacactctcttttgagcactctctctagcactcac 41095650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 11135736 - 11135783
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  11135736 gaggaatgctagcaacactctcttttgagcactctctctagcactcac 11135783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 26980445 - 26980398
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  26980445 gaggaatgctaacaacactcacttttcaacactctctctaatactcac 26980398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 32848766 - 32848719
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||| |||| ||| ||||||||||||||||||| |||||||    
T  32848766 gaggaatgctaacaacactctcttttgaacactctctctagcactcac 32848719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 13114661 - 13114711
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||| | |||||||||| ||| |||||| ||||||||||||||||||||    
T  13114661 aaagagtagtgctagcaacactctcttttggacactctctctaacactcac 13114711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 13114856 - 13114806
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||| ||||||||| || ||| |||||| ||||||||||||||||||||    
T  13114856 aaagagaaatgctagcgacactctcttttggacactctctctaacactcac 13114806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 39019571 - 39019617
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactc 120  Q
    ||||||||||||||||| ||| ||||| ||||||||||| |||||||    
T  39019571 agaggaatgctagcaacactctcttttcaacactctctcaaacactc 39019617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 46335092 - 46335138
Alignment:
Q  76 aggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||  |||||||||||||||||| |||| |||||||    
T  46335092 aggaatgctagcaaacctcacttttgaacactctttctagcactcac 46335138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 41948139 - 41948188
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| |||||||||||   || |||||||||||||||||||||||||||    
T  41948139 aagagcaatgctagcaatattctcttttgaacactctctctaacactcac 41948188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 931370 - 931418
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||||||||| ||| || ||||||| ||||||    
T  931370 agaggaatgctagcaacactcacttttcaactctatctctaatactcac 931418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 6325993 - 6325957
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctct 111  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  6325993 gaggaatactagcaacgctcacttttgaacactctct 6325957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 10659953 - 10659905
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| |||| ||||||| ||||||||| || ||||||||||||||||||    
T  10659953 agagtaatgttagcaacactcacttttcaatactctctctaacactcac 10659905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 11851921 - 11851957
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctct 111  Q
    ||||||||||||||||  |||||||||||||||||||    
T  11851921 gaggaatgctagcaacattcacttttgaacactctct 11851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 11851957 - 11851921
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  11851957 agagagtgttcaaaagtgaatgttgctagcattcctc 11851921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 13889293 - 13889329
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||||||||| |||||||||||||| |||||    
T  13889293 agagagtgttcaaaagagagtgttgctagcattcctc 13889329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 14093990 - 14094042
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| |||||||| ||||||| ||| |||||||||||||| | ||||||||||    
T  14093990 taaacgaggaatgttagcaacactctcttttgaacactctttgtaacactcac 14094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 25543373 - 25543337
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||| |||||||||||||||||||| |||||    
T  25543373 agagagtgtttaaaagtgagtgttgctagcattcctc 25543337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 13407318 - 13407364
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactca 121  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  13407318 gaggaatgctagcaacactctcttttgaacactctctctaacactca 13407364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 8914766 - 8914815
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  8914766 aagaggaatgctagcaacactcacttttgagcgctctctctaacactcac 8914815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 43506533 - 43506571
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  43506533 aagaggaatgctagcaacactcacttttgaacactctct 43506571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 1977358 - 1977309
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||  ||||||||| ||||||||||||| |||||||    
T  1977358 aagaggaatgctagcaatactcactttttaacactctctctagcactcac 1977309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 31691692 - 31691647
Alignment:
Q  77 ggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  31691692 ggaatgctagcaacactcacttttgaaaactctctttaacactcac 31691647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 16983390 - 16983438
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||| ||||||||| |||||||| |||| |||||||    
T  16983390 agaggaatgctagcaacactcacttttcaacactctatctagcactcac 16983438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 16983580 - 16983532
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| |||||||||||| ||| |||||||||||||||||||| ||||||    
T  16983580 agagtaatgctagcaacactctcttttgaacactctctctaatactcac 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 34861372 - 34861332
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  34861372 aaaagaggaatgctagcacctctcacttttcaacactctct 34861332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 34952458 - 34952498
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaa 115  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  34952458 gaggaatgctagcaacactcactttttaacactctctctaa 34952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 43506571 - 43506535
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    ||||||||||||||||||||||||||||||| |||||    
T  43506571 agagagtgttcaaaagtgagtgttgctagcattcctc 43506535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 1961445 - 1961403
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaa 115  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||    
T  1961445 aagagtaatgctagcaacactctcttttgaacactctctctaa 1961403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 43121659 - 43121621
Alignment:
Q  83 ctagcaactctcacttttgaacactctctctaacactca 121  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  43121659 ctagcaatactcacttttgaacactctctctaacactca 43121621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 38091538 - 38091489
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||||  || ||||| ||||||||||| |||||||||    
T  38091538 aagaggaatgctagcaacattctcttttcaacactctctccaacactcac 38091489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 5980057 - 5980017
Alignment:
Q  82 gctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||| ||| |||||||||||||||||||| ||||||    
T  5980057 gctagcaacactctcttttgaacactctctctaatactcac 5980017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 13407354 - 13407318
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||||||||| |||||||||||||| |||||    
T  13407354 agagagtgttcaaaagagagtgttgctagcattcctc 13407318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 34952494 - 34952458
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||| |||||||||||||||||||| |||||    
T  34952494 agagagtgttaaaaagtgagtgttgctagcattcctc 34952458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 40991774 - 40991725
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  40991774 aagaggaatgctagcaacactcacttttcaacactctctctatcactcac 40991725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 53871048 - 53870999
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  53871048 aagaggaatgctagcaacactcactttccaacactctctctaacactcac 53870999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 20225527 - 20225486
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctct 111  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  20225527 taaaggaggaatgctagcaacactcacttttgaacactctct 20225486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 20225486 - 20225523
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctcc 187  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20225486 agagagtgttcaaaagtgagtgttgctagcattcctcc 20225523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 2187806 - 2187854
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactca 121  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  2187806 aagacgaatgctagcaacactcgcttttgagcactctctctaacactca 2187854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 20225401 - 20225354
Alignment:
Q  137 atttaaaccaataagagag--tgttcaaaagtgagtgttgctagcact 182  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||    
T  20225401 atttaaaccaataagagagagtgttcaaaagagagtgttgctagcact 20225354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 24834571 - 24834623
Alignment:
Q  71 aaaagaggaatgctagcaactctcacttttgaacactctctctaacactcaca 123  Q
    ||||||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  24834571 aaaagagaaatgctagcaacactcactttttgacactctctctaacgctcaca 24834623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 8108957 - 8109000
Alignment:
Q  79 aatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| ||||||||| ||||||||||||| |||||||    
T  8108957 aatgctagcaacactcacttttcaacactctctctagcactcac 8109000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 8109137 - 8109094
Alignment:
Q  79 aatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||    
T  8109137 aatgctagcaacactctcttttgaacactctctctaatactcac 8109094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 37315564 - 37315607
Alignment:
Q  79 aatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||    
T  37315564 aatgctagcaacactctcttttgagcactctctctaacactcac 37315607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 19447280 - 19447313
Alignment:
Q  149 aagagagtgttcaaaagtgagtgttgctagcact 182  Q
    ||||||||||||||||| ||||||||||||||||    
T  19447280 aagagagtgttcaaaagagagtgttgctagcact 19447313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 26361301 - 26361350
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| |||||||||||| ||| ||||||||||| |||||||| ||||||    
T  26361301 aagagtaatgctagcaacactctcttttgaacaccctctctaatactcac 26361350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 33653674 - 33653633
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctcta 114  Q
    |||||||||||||||||| |||| |||| |||||||||||||    
T  33653674 aagaggaatgctagcaacactcagttttcaacactctctcta 33653633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 50481605 - 50481560
Alignment:
Q  137 atttaaaccaataagagagtgttcaaaagtgagtgttgctagcact 182  Q
    ||||||||||||||||||||| || | || ||||||||||||||||    
T  50481605 atttaaaccaataagagagtgatctagagagagtgttgctagcact 50481560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 13070096 - 13070140
Alignment:
Q  156 tgttcaaaagtgagtgttgctagcactcctccatataaaaatggc 200  Q
    |||||||||| |||||||||||||||||||| |||| || |||||    
T  13070096 tgttcaaaagagagtgttgctagcactcctcaatattaatatggc 13070140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 20454716 - 20454676
Alignment:
Q  82 gctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||  || |||||||||||||||||||||||||||    
T  20454716 gctagcaacattctcttttgaacactctctctaacactcac 20454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 40812033 - 40812081
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| ||||||||||| |||  |||||||||||||||||| |||||||    
T  40812033 agaggtatgctagcaacactcttttttgaacactctctctagcactcac 40812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 40991736 - 40991772
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||| |||||||||||||||||||| |||||    
T  40991736 agagagtgttgaaaagtgagtgttgctagcattcctc 40991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 43771126 - 43771162
Alignment:
Q  78 gaatgctagcaactctcacttttgaacactctctcta 114  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  43771126 gaatggtagcaacactcacttttgaacactctctcta 43771162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 8442022 - 8441973
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| | |||| |||| |||||||||||||||||||||    
T  8442022 aagaggaatgctagcagcactcatttttcaacactctctctaacactcac 8441973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 8450826 - 8450777
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| | |||| |||| |||||||||||||||||||||    
T  8450826 aagaggaatgctagcagcactcatttttcaacactctctctaacactcac 8450777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 10061050 - 10060998
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||  ||||||| ||| ||||||| |||||||||||||||||||    
T  10061050 taaaagaggaatattagcaacactctcttttgagcactctctctaacactcac 10060998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 34905332 - 34905380
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| |||||||||||| |||| |||| |||||||||||||||||||||    
T  34905332 agagaaatgctagcaacactcatttttcaacactctctctaacactcac 34905380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 12753909 - 12753944
Alignment:
Q  152 agagtgttcaaaagtgagtgttgctagcactcctcc 187  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12753909 agagtgttcaaaagtgagtgttgctagcattcctcc 12753944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 19090209 - 19090256
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  19090209 gaggaatgctagcaacactctcttttgagcactctctctagcactcac 19090256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 10060853 - 10060903
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||||||||||| ||| |||||||||||||| | ||||| ||||    
T  10060853 aaagaggaatgctagcaacactctcttttgaacactctttataacaatcac 10060903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 12753943 - 12753909
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactct 109  Q
    |||||||||||||||| ||||||||||||||||||    
T  12753943 gaggaatgctagcaacactcacttttgaacactct 12753909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 10133343 - 10133294
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| ||||| ||| ||| ||||||||| |||||||||||||||||||||    
T  10133343 aagaagaatggtagaaacactcacttttcaacactctctctaacactcac 10133294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 19737431 - 19737476
Alignment:
Q  77 ggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||| ||| |||||||||| |||||||| |||||||    
T  19737431 ggaatgctagcaacactctcttttgaacattctctctatcactcac 19737476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 29423350 - 29423391
Alignment:
Q  81 tgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||||||||  |||| |||||||||||||||||||||||||    
T  29423350 tgctagcaacattcacctttgaacactctctctaacactcac 29423391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 31116296 - 31116260
Alignment:
Q  86 gcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  31116296 gcaacactcacttttgaacactctctctaacattcac 31116260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 35128870 - 35128902
Alignment:
Q  150 agagagtgttcaaaagtgagtgttgctagcact 182  Q
    |||||||||||||||| ||||||||||||||||    
T  35128870 agagagtgttcaaaagagagtgttgctagcact 35128902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 28611962 - 28611914
Alignment:
Q  74 agaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||| |||| ||||||||||| |||||||||||||| ||||    
T  28611962 agaggaatgctaacaacactcacttttgagcactctctctaacattcac 28611914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 34368357 - 34368404
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| || | ||||||||||| ||||||||||||||    
T  34368357 gaggaatgctagcaacacttatttttgaacactttctctaacactcac 34368404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 40971447 - 40971494
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    ||||| |||||||||| ||| |||||||||||||| ||||||||||||    
T  40971447 gaggagtgctagcaacactctcttttgaacactctatctaacactcac 40971494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 42224774 - 42224727
Alignment:
Q  75 gaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  42224774 gaggaatgctagcaacactctcttttgagcactctctctagcactcac 42224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 4959273 - 4959315
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctctaa 115  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  4959273 aagaggaatgctagcaacactctcttttgagcactctctctaa 4959315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 8622959 - 8622909
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||||| |||||||||||| |||| |||||||||| |||| ||||||||||    
T  8622959 aaagagaaatgctagcaacactcatttttgaacaccctctttaacactcac 8622909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 28611770 - 28611816
Alignment:
Q  72 aaagaggaatgctagcaactctcacttttgaacactctctctaacac 118  Q
    |||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  28611770 aaagagaaatgctagcaacactctcttttgagcactctctctaacac 28611816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 40971481 - 40971447
Alignment:
Q  152 agagtgttcaaaagtgagtgttgctagcactcctc 186  Q
    |||||||||||||| ||||||||||||||||||||    
T  40971481 agagtgttcaaaagagagtgttgctagcactcctc 40971447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 31542433 - 31542380
Alignment:
Q  68 tataaaagaggaatgctagcaactctcacttttgaacactctctctaacactca 121  Q
    |||||||||| |||||||||||  ||  ||||||| ||||||||||||||||||    
T  31542433 tataaaagagaaatgctagcaaaactatcttttgagcactctctctaacactca 31542380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 34368547 - 34368507
Alignment:
Q  73 aagaggaatgctagcaactctcacttttgaacactctctct 113  Q
    |||||||||||||||||| ||| ||||||| ||||||||||    
T  34368547 aagaggaatgctagcaacactctcttttgagcactctctct 34368507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 40971641 - 40971589
Alignment:
Q  70 taaaagaggaatgctagcaactctcacttttgaacactctctctaacactcac 122  Q
    |||| ||||||||||| |||| ||| ||||||| ||||||||||| |||||||    
T  40971641 taaatgaggaatgctaacaacactctcttttgagcactctctctagcactcac 40971589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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