View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_3 (Length: 712)
Name: NF18317_low_3
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 304 - 697
Target Start/End: Original strand, 43567355 - 43567748
Alignment:
| Q |
304 |
catttcattgagataccgtaaaaacaagttagaattttttattgtttttatgctaaaatggattgaattttaggaaggatgtattatataatatgttaga |
403 |
Q |
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| T |
43567355 |
catttcattgagataccgtaaaaacaagttagaattttttattctttttttggtaaa-tggattgaattttaggaaggatgtattgtataatatgttaga |
43567453 |
T |
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| Q |
404 |
agcnnnnnnnnn-attgaagcttctacaaactttttattgaggtactataaagcaagcttagatatttttgctaaaatgtcatttttaatttaaaaaggc |
502 |
Q |
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| T |
43567454 |
agcttttttttttattgaagcttctacaaactttttattgaggtactataaagcaagcttagatatttttgccaaaatgtcatttttaatttaaaaaggc |
43567553 |
T |
|
| Q |
503 |
caaacataccctaagcccaaaacagacctaaagtcccaaaataatttcttccccttcaattctcacctccctttctgcttacggccatctttactctcaa |
602 |
Q |
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| T |
43567554 |
caaacataccctaagcccaaaaaagatctaaagtcccaaaataatttcttccccttcaattctcacctcccttagtgcttacggccatctttactctcaa |
43567653 |
T |
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| Q |
603 |
agtctaagttgggattatattaaagatttttgctattcaaaacatgtagttacaacgaatttcaagagaaagatataaaatggagaaggtggaag |
697 |
Q |
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| T |
43567654 |
agtctaagttgggattatattaaagatttttgctattcaaaacatgtagttacaacgaatttcaagagaaagatataaaatggagaaggtggaag |
43567748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 43567066 - 43567287
Alignment:
| Q |
13 |
attatactacaagagagagtgagagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttcttcaatgggtagctaataagctct |
112 |
Q |
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| T |
43567066 |
attatactacaagagagagtgagagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttcttcaatgggtagctaataagctc- |
43567164 |
T |
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| Q |
113 |
atgtgttattaagcaaaaacatatttcattgaagatgctcttagaaaaagacgtgtaattagtttcgttgattttattaaaaattgactaacattccaaa |
212 |
Q |
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|||| ||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
43567165 |
-tgtgctattaggcaaaaacatctttcattgaagatgctcctagggaaagacgtgtaattagttttgttgattttattaaaaattggataacattccaaa |
43567263 |
T |
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| Q |
213 |
attattctttattaattacatttg |
236 |
Q |
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| T |
43567264 |
attattctttattaatcacatttg |
43567287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 7239900 - 7239973
Alignment:
| Q |
22 |
caagagagagtgagagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttcttcaatg |
95 |
Q |
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| T |
7239900 |
caagagggagagagaggcaatgcttgcacaatccttgcttctaaatagcattgcttcttatttcttcttcaatg |
7239973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 33832758 - 33832889
Alignment:
| Q |
24 |
agagagagtgagagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttcttcaatggg--tagctaataagctctatgtgttat |
121 |
Q |
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| T |
33832758 |
agagagagagagagagagtgcttgtataagccttgtatc--aatatcagtccttcttatttcttcttcaatgggagtagctaataagctctacatgttat |
33832855 |
T |
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| Q |
122 |
taagcaaaaacatatttcattgaagatgctcttag |
156 |
Q |
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| T |
33832856 |
taaac-aaaacatatctcattggagatgctattag |
33832889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 33911312 - 33911443
Alignment:
| Q |
24 |
agagagagtgagagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttcttcaatggg--tagctaataagctctatgtgttat |
121 |
Q |
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|||||||| |||||| | ||||||||||| ||||| ||| |||| || | ||| ||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
33911312 |
agagagagagagagagagtgcttgtataagccttgtatc--aatatcagtccttcttatttcttcttcaatgggagtagctaataagctctacatgttat |
33911409 |
T |
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| Q |
122 |
taagcaaaaacatatttcattgaagatgctcttag |
156 |
Q |
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| T |
33911410 |
taaac-aaaacatatctcattggagatgctattag |
33911443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 35094405 - 35094328
Alignment:
| Q |
34 |
agagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttcttcaat--gggtagctaataagc |
109 |
Q |
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| T |
35094405 |
agagacaatgcttatacaagccttgcatctaaatagcactgcttcttatttcttctccaatgggggtagctaataagc |
35094328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 28542379 - 28542435
Alignment:
| Q |
33 |
gagagacaatgcttgtataaaccttgcatctaaataacactacttgttatttcttct |
89 |
Q |
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| T |
28542379 |
gagagacaatgcttgtacaagctttgcatctaaataacactgcttcttatttcttct |
28542435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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