View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_32 (Length: 422)
Name: NF18317_low_32
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 36489540 - 36489810
Alignment:
| Q |
2 |
acaataagaagggatagtttgagcaactgatttaaggaactcctcatttcctgtccgagagagcttcttactattcttaacaagaagaattaagcttcca |
101 |
Q |
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| T |
36489540 |
acaataagaagggatagcttgagcaactgatttaatgaactc-tcctttcctgttcgagagagcttcttactattc----caacaagaattaagcttcca |
36489634 |
T |
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| Q |
102 |
caaccgattcttaatatagttaaagatcgatttttcgcttctacctatcatagattggagcccaagatattttccggagctcatgcactttggctcttgt |
201 |
Q |
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| T |
36489635 |
caaccgattcttaatgtagttaaagatcgatttttcgcttctacctatcatagattggagcccaagatattttccggagcccatgcactttggcacttgt |
36489734 |
T |
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| Q |
202 |
aaaatattagagagcgtggaggaatatttctactaaagaaaatctcatatttttacttcttaatcatttgtccata |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36489735 |
aaaatattagagagcgtggaggaatatttctactaaagaaaatctcatatttttacttcttaatcatttgcccata |
36489810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 277 - 406
Target Start/End: Original strand, 36489904 - 36490033
Alignment:
| Q |
277 |
atgacaaatagtaggaactcatcatattaccttcactccacggaccattcctttttgcatttttattagtgtcgctattccttccgaacacataataaaa |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36489904 |
atgacaaatagtaggaactcatcatattaccttcactccacggaccattcctttttgcatttttattagtgtcgccattccttccgaacacataataaaa |
36490003 |
T |
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| Q |
377 |
agataatacgataaaagatcaccctatctt |
406 |
Q |
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||| |||||||||||| |||||||||||| |
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| T |
36490004 |
agaaaatacgataaaaactcaccctatctt |
36490033 |
T |
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