View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_34 (Length: 417)

Name: NF18317_low_34
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_34
NF18317_low_34
[»] chr5 (2 HSPs)
chr5 (13-373)||(12593890-12594256)
chr5 (13-172)||(39507872-39508031)
[»] chr7 (2 HSPs)
chr7 (13-172)||(12332803-12332957)
chr7 (13-172)||(6951778-6951932)
[»] chr4 (1 HSPs)
chr4 (13-172)||(18186157-18186311)
[»] chr3 (1 HSPs)
chr3 (13-172)||(13242618-13242772)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 12594256 - 12593890
Alignment:
Q  13 aatataccgaattcttattaattcttagtcgatttgaattgaaatttttaaattattagattaatgaaaattagtctagtctaaatactaaatagaaatg 112  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  12594256 aatataccagattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaatgaaaattagtctaatctaaatactaaatagaaaag 12594157  T
Q  113 ttttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtatatacgtctaaaatatgttaagattctttatgtgatctag-- 210  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||      
T  12594156 ctttttattttattaaatttacattatttcgaatcaaattcatactagtatttgagtatatacgtctaaaatatgttaagattctttatgtggtctagca 12594057  T
Q  211 ---------gctaatatcaatatgcgtgacctgggttcaacccttatcatgtccattttcttacannnnnnnaaaagtattaatttaatttaaaagagtt 301  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||     ||||||||||||||||    
T  12594056 gtaggggttgctaatatcaatatgcgtgacctgggttcaacccttatcatgtccattttcttacatttttttaaaagta-----ttaatttaaaagagtt 12593962  T
Q  302 aatcataaaagattaagttcaagggaatcaaaactaaaaccgtaacttcatgtataaaaaccaaagtcactt 373  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||    
T  12593961 aatcataaaaaattaagttcaagggaatcaaacctaaaactgtaacttcatgtataaagacctaagtcactt 12593890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 39508031 - 39507872
Alignment:
Q  13 aatataccgaattcttattaattcttagtcgatttgaattgaaatttttaaattattagattaatgaaaattagtctagtctaaatactaaatagaaatg 112  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  39508031 aatataccggattcttattaatttttagtcgatttgaattgaaattttcaaattattaaattaatgaaaattaatctaatctaaatactaaatagaaatg 39507932  T
Q  113 ttttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 172  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39507931 ctttttattttattaaatttacattatttcggatcaaattcgtactagtatctgagtata 39507872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 12332803 - 12332957
Alignment:
Q  13 aatataccgaattcttattaattcttagtcgatttgaattgaaatttttaaattattagattaatgaaaattagtctagtctaaatactaaatagaaatg 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     || |||||||||||||||||||||    
T  12332803 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaatgaaaat-----taatctaaatactaaatagaaatg 12332897  T
Q  113 ttttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 172  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332898 ctttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 12332957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 6951932 - 6951778
Alignment:
Q  13 aatataccgaattcttattaattcttagtcgatttgaattgaaatttttaaattattagattaatgaaaattagtctagtctaaatactaaatagaaatg 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     || |||||||||||||||||||||    
T  6951932 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaatgaaaat-----taatctaaatactaaatagaaatg 6951838  T
Q  113 ttttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 172  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6951837 ctttttattttattaaatttacattatttcggatcaaattcatactagtacctgagtata 6951778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 18186157 - 18186311
Alignment:
Q  13 aatataccgaattcttattaattcttagtcgatttgaattgaaatttttaaattattagattaatgaaaattagtctagtctaaatactaaatagaaatg 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     || |||||||||||||||||||||    
T  18186157 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaatgaaaat-----taatctaaatactaaatagaaatg 18186251  T
Q  113 ttttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 172  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186252 ctttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 18186311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 13242772 - 13242618
Alignment:
Q  13 aatataccgaattcttattaattcttagtcgatttgaattgaaatttttaaattattagattaatgaaaattagtctagtctaaatactaaatagaaatg 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     || |||||||||||||||||||||    
T  13242772 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaatgaaaat-----taatctaaatactaaatagaaatg 13242678  T
Q  113 ttttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 172  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242677 ctttttattttattaaatttacattatttcggatcaaattcatactagtatctgagtata 13242618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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