View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_36 (Length: 410)
Name: NF18317_low_36
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 29471624 - 29471246
Alignment:
| Q |
13 |
aatatcgatattatcggttgagttaggtcttacacacaatttatttaagtatttgagtcatattttataatgcgatttcaataaaaaatttgtgatagtt |
112 |
Q |
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| T |
29471624 |
aatatcggtattgtcggttgagctaggtcttacacataatttgtttaagtatttgagtcacattttataatgtgatttcaataaattttatgtgatagtt |
29471525 |
T |
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| Q |
113 |
tatgaaaacaattcacagcatatatgaaaagttgtttagtcacattttgtagttgaatgaataaatacttaactaatttctagtgatcattatcatatat |
212 |
Q |
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| T |
29471524 |
tattaaaacaattcacagcatatatgaagagttgtttagtcacattttgtagttgaat----aaatacttaactaatttctagtgatcattatcatacat |
29471429 |
T |
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| Q |
213 |
aactcttgacatttttggattttcaggtacttggcagtggctctcatgcattttccatgctatggcttatttattttgatagtgaagttgaagcattttt |
312 |
Q |
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| T |
29471428 |
atctcttgacatttttggattttcaggtacttggcagtggctctcatgcattttccatgctatggcttatttattttgatagtgaagttgaagcattttt |
29471329 |
T |
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| Q |
313 |
ggttatctagatcatttcctggatcatcaagaattgtacattgataacacattccaaaaatatcaatcactgaatgaaggcta |
395 |
Q |
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| T |
29471328 |
ggttatctagatcatttcctggatcatcaagaattgtacattgattacacaatccagaaatattaatcactgaatgaaggcta |
29471246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 395
Target Start/End: Complemental strand, 29461966 - 29461611
Alignment:
| Q |
21 |
tattatcggttgagttaggtcttacacacaatttatttaagtatttgagtcatattttataatgcgatttcaataaaaaatttgtgatagtttatgaaaa |
120 |
Q |
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| T |
29461966 |
tattgtcggttgagctaggtcttacggacaatttgtttaagtatttgaatcacattttataacg-gagtttaatct----tctatggtagttcatgaaaa |
29461872 |
T |
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| Q |
121 |
caattcacagcatatatgaaaagttgtttagtcacattttgtagttgaatgaataaatacttaactaatttctagtgatcattatcatatataactcttg |
220 |
Q |
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| T |
29461871 |
ccattcacaacttatatggaaaatagttcagtcacattttgtagttgaat----aaatattt---taatttctaatgatcatact------tacctcttg |
29461785 |
T |
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| Q |
221 |
acatttttggattttcaggtacttggcagtggctctcatgcattttccatgctatggcttatttattttgatagtgaagttgaagcatttttggttatct |
320 |
Q |
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| T |
29461784 |
acatttt-gtatattcaggtacttgggagtgaatctcatgcattttccatgctacggcttatttattttgatagtgaagttgaagcatttttggttaaat |
29461686 |
T |
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| Q |
321 |
agatcatttcctggatcatcaagaattgtacattgataacacattccaaaaatatcaatcactgaatgaaggcta |
395 |
Q |
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| T |
29461685 |
agatcatttcctggatcatcaagaattgtacattgagtacacattccaaaaatattaatcactgaatgaaggcta |
29461611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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